Search Results - "Mark Okon"
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Arginine: Its pKa value revisited
Published in Protein science (01-05-2015)“…Using complementary approaches of potentiometry and NMR spectroscopy, we have determined that the equilibrium acid dissociation constant (pKa value) of the…”
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Biophysical characterization of the ETV6 PNT domain polymerization interfaces
Published in The Journal of biological chemistry (01-01-2021)“…ETV6 is an E26 transformation specific family transcriptional repressor that self-associates by its PNT domain to facilitate cooperative DNA binding…”
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3
Sortase-mediated segmental labeling: A method for segmental assignment of intrinsically disordered regions in proteins
Published in PloS one (28-10-2021)“…A significant number of proteins possess sizable intrinsically disordered regions (IDRs). Due to the dynamic nature of IDRs, NMR spectroscopy is often the tool…”
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Synergy of aromatic residues and phosphoserines within the intrinsically disordered DNA-binding inhibitory elements of the Ets-1 transcription factor
Published in Proceedings of the National Academy of Sciences - PNAS (29-07-2014)“…The E26 transformation-specific (Ets-1) transcription factor is autoinhibited by a conformationally disordered serine-rich region (SRR) that transiently…”
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5
The Modular Structure of the Inner-Membrane Ring Component PrgK Facilitates Assembly of the Type III Secretion System Basal Body
Published in Structure (London) (06-01-2015)“…The type III secretion system (T3SS) is a large macromolecular assembly found at the surface of many pathogenic Gram-negative bacteria. Its role is to inject…”
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Discovery of a Highly Conserved Peptide in the Iron Transporter Melanotransferrin that Traverses an Intact Blood Brain Barrier and Localizes in Neural Cells
Published in Frontiers in neuroscience (02-06-2021)“…The blood-brain barrier (BBB) hinders the distribution of therapeutics intended for treatment of diseases of the brain. Our previous studies demonstrated that…”
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Antibody recognition of a unique tumor-specific glycopeptide antigen
Published in Proceedings of the National Academy of Sciences - PNAS (01-06-2010)“…Aberrant glycosylation and the overexpression of certain carbohydrate moieties is a consistent feature of cancers, and tumor-associated oligosaccharides are…”
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A Protein Export Pathway Involving Escherichia coli Porins
Published in Structure (London) (03-07-2012)“…Escherichia coli export the protein YebF into the extracellular medium by a two-step process. However, as no general outer membrane protein secretion system…”
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pH-dependent random coil 1H, 13C, and 15N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements
Published in Journal of biomolecular NMR (01-11-2014)Get full text
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10
Structure, dynamics, and ionization equilibria of the tyrosine residues in Bacillus circulans xylanase
Published in Journal of biomolecular NMR (01-11-2011)“…We have developed NMR spectroscopic methods to investigate the tyrosines within Bacillus circulans xylanase (BcX). Four slowly exchanging buried tyrosine…”
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11
Structural Characterization of the Type-III Pilot-Secretin Complex from Shigella flexneri
Published in Structure (London) (08-10-2008)“…Assembly of the type-III secretion apparatus, which translocates proteins through both membranes of Gram-negative bacterial pathogens into host cells, requires…”
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12
pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements
Published in Journal of biomolecular NMR (01-11-2014)“…The pK a values and charge states of ionizable residues in polypeptides and proteins are frequently determined via NMR-monitored pH titrations. To aid the…”
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13
Structural and Dynamic Independence of Isopeptide-linked RanGAP1 and SUMO-1
Published in The Journal of biological chemistry (19-11-2004)“…Although sumoylation regulates a diverse and growing number of recognized biological processes, the molecular mechanisms by which the covalent attachment of…”
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14
Unambiguous Determination of the Ionization State of a Glycoside Hydrolase Active Site Lysine by 1H−15N Heteronuclear Correlation Spectroscopy
Published in Journal of the American Chemical Society (06-12-2006)“…We have investigated the lysine side chain amines in the 34 kDa catalytic domain from Cellulomonas fimi β-(1,4)-glycosidase Cex (or CfXyn10A) using 1H-detected…”
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15
Ligand- and pH-Induced Structural Transition of Gypsy Moth Lymantria dispar Pheromone-Binding Protein 1 (LdisPBP1)
Published in Biochemistry (Easton) (22-09-2020)“…Pheromone-binding proteins (PBPs) are small, water-soluble proteins found in the lymph of pheromone-sensing hairs. PBPs are essential in modulating pheromone…”
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O-GlcNAc Modification of tau Directly Inhibits Its Aggregation without Perturbing the Conformational Properties of tau Monomers
Published in Journal of molecular biology (17-04-2014)“…The aggregation of the microtubule-associated protein tau into paired helical filaments to form neurofibrillary tangles constitutes one of the pathological…”
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The p K a values of the catalytic residues in the retaining glycoside hydrolase T26H mutant of T4 lysozyme
Published in Protein science (01-03-2019)Get full text
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Structural and Dynamics Studies of Pax5 Reveal Asymmetry in Stability and DNA Binding by the Paired Domain
Published in Journal of molecular biology (05-06-2016)“…The eukaryotic transcription factor Pax5 or B-cell specific activator protein (BSAP) is central to B-cell development and has been implicated in a large number…”
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Characterization of the Pilotin-Secretin Complex from the Salmonella enterica Type III Secretion System Using Hybrid Structural Methods
Published in Structure (London) (04-02-2021)“…The type III secretion system (T3SS) is a multi-membrane-spanning protein channel used by Gram-negative pathogenic bacteria to secrete effectors directly into…”
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Structural Transitions as Determinants of the Action of the Calcium-Dependent Antibiotic Daptomycin
Published in Chemistry & biology (01-07-2004)“…Daptomycin is a cyclic anionic lipopeptide antibiotic recently approved for the treatment of complicated skin infections (Cubicin). Its function is dependent…”
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