Search Results - "Marinari, Enzo"

Power spectral density of a single Brownian trajectory: what one can and cannot learn from it by Krapf, Diego, Marinari, Enzo, Metzler, Ralf, Oshanin, Gleb, Xu, Xinran, Squarcini, Alessio

“…The power spectral density (PSD) of any time-dependent stochastic process Xt is a meaningful feature of its spectral content. In its text-book definition, the…”
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MicroRNAs as a Selective Channel of Communication between Competing RNAs: a Steady-State Theory by Figliuzzi, Matteo, Marinari, Enzo, De Martino, Andrea

“…It has recently been suggested that the competition for a finite pool of microRNAs (miRNA) gives rise to effective interactions among their common targets…”
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Constrained Allocation Flux Balance Analysis by Mori, Matteo, Hwa, Terence, Martin, Olivier C, De Martino, Andrea, Marinari, Enzo

“…New experimental results on bacterial growth inspire a novel top-down approach to study cell metabolism, combining mass balance and proteomic constraints to…”
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Competing endogenous RNA crosstalk at system level by Miotto, Mattia, Marinari, Enzo, De Martino, Andrea

“…microRNAs (miRNAs) regulate gene expression at post-transcriptional level by repressing target RNA molecules. Competition to bind miRNAs tends in turn to…”
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Passive advection of fractional Brownian motion by random layered flows by Squarcini, Alessio, Marinari, Enzo, Oshanin, Gleb

“…We study statistical properties of the process Y(t) of a passive advection by quenched random layered flows in situations when the inter-layer transfer is…”
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Spectral Content of a Single Non-Brownian Trajectory by Krapf, Diego, Lukat, Nils, Marinari, Enzo, Metzler, Ralf, Oshanin, Gleb, Selhuber-Unkel, Christine, Squarcini, Alessio, Stadler, Lorenz, Weiss, Matthias, Xu, Xinran

“…Time-dependent processes are often analyzed using the power spectral density (PSD) calculated by taking an appropriate Fourier transform of individual…”
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Frequency–frequency correlations of single-trajectory spectral densities of Gaussian processes by Squarcini, Alessio, Marinari, Enzo, Oshanin, Gleb, Peliti, Luca, Rondoni, Lamberto

“…We investigate the stochastic behavior of the single-trajectory spectral density S ( ω , T ) of several Gaussian stochastic processes, i.e., Brownian motion,…”
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The Mpemba effect in spin glasses is a persistent memory effect by Baity-Jesi, Marco, Calore, Enrico, Cruz, Andres, Fernandez, Luis Antonio, Gil-Narvión, José Miguel, Gordillo-Guerrero, Antonio, Iñiguez, David, Lasanta, Antonio, Maiorano, Andrea, Marinari, Enzo, Martin-Mayor, Victor, Moreno-Gordo, Javier, Sudupe, Antonio Mun˜oz, Navarro, Denis, Parisi, Giorgio, Perez-Gaviro, Sergio, Ricci-Tersenghi, Federico, Ruiz-Lorenzo, Juan Jesus, Schifano, Sebastiano Fabio, Seoane, Beatriz, Tarancón, Alfonso, Tripiccione, Raffaele, Yllanes, David

“…The Mpemba effect occurs when a hot system cools faster than an initially colder one, when both are refrigerated in the same thermal reservoir. Using the…”
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Probing the Limits to MicroRNA-Mediated Control of Gene Expression by Martirosyan, Araks, Figliuzzi, Matteo, Marinari, Enzo, De Martino, Andrea

“…According to the 'ceRNA hypothesis', microRNAs (miRNAs) may act as mediators of an effective positive interaction between long coding or non-coding RNA…”
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A yield-cost tradeoff governs Escherichia coli’s decision between fermentation and respiration in carbon-limited growth by Mori, Matteo, Marinari, Enzo, De Martino, Andrea

“…Living cells react to changes in growth conditions by re-shaping their proteome. This accounts for different stress-response strategies, both specific (i.e.,…”
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Cross-correlations of American baby names by Barucca, Paolo, Jacopo Rocchi, Enzo Marinari, Giorgio Parisi, Federico Ricci-Tersenghi

“…The quantitative description of cultural evolution is a challenging task. The most difficult part of the problem is probably to find the appropriate measurable…”
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Towards a robust criterion of anomalous diffusion by Sposini, Vittoria, Krapf, Diego, Marinari, Enzo, Sunyer, Raimon, Ritort, Felix, Taheri, Fereydoon, Selhuber-Unkel, Christine, Benelli, Rebecca, Weiss, Matthias, Metzler, Ralf, Oshanin, Gleb

“…Anomalous-diffusion, the departure of the spreading dynamics of diffusing particles from the traditional law of Brownian-motion, is a signature feature of a…”
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Temperature chaos is present in off-equilibrium spin-glass dynamics by Baity-Jesi, Marco, Calore, Enrico, Cruz, Andrés, Fernandez, Luis Antonio, Gil-Narvion, José Miguel, Gonzalez-Adalid Pemartin, Isidoro, Gordillo-Guerrero, Antonio, Iñiguez, David, Maiorano, Andrea, Marinari, Enzo, Martin-Mayor, Víctor, Moreno-Gordo, Javier, Muñoz-Sudupe, Antonio, Navarro, Denis, Paga, Ilaria, Parisi, Giorgio, Perez-Gaviro, Sergio, Ricci-Tersenghi, Federico, Ruiz-Lorenzo, Juan Jesús, Schifano, Sebastiano Fabio, Seoane, Beatriz, Tarancon, Alfonso, Tripiccione, Raffaele, Yllanes, David

“…Experiments featuring non-equilibrium glassy dynamics under temperature changes still await interpretation. There is a widespread feeling that temperature…”
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Thermodynamic glass transition in a spin glass without time-reversal symmetry by Baños, Raquel Alvarez, Cruz, Andres, Fernandez, Luis Antonio, Gil-Narvion, Jose Miguel, Gordillo-Guerrero, Antonio, Guidetti, Marco, Iñiguez, David, Maiorano, Andrea, Marinari, Enzo, Martin-Mayor, Victor, Monforte-Garcia, Jorge, Muñoz Sudupe, Antonio, Navarro, Denis, Parisi, Giorgio, Perez-Gaviro, Sergio, Ruiz-Lorenzo, Juan Jesus, Schifano, Sebastiano Fabio, Seoane, Beatriz, Tarancon, Alfonso, Tellez, Pedro, Tripiccione, Raffaele, Yllanes, David

“…Spin glasses are a longstanding model for the sluggish dynamics that appear at the glass transition. However, spin glasses differ from structural glasses in a…”
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A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks by De Martino, Daniele, Figliuzzi, Matteo, De Martino, Andrea, Marinari, Enzo

“…The integration of various types of genomic data into predictive models of biological networks is one of the main challenges currently faced by computational…”
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Noise processing by microRNA-mediated circuits: The Incoherent Feed-Forward Loop, revisited by Grigolon, Silvia, Di Patti, Francesca, De Martino, Andrea, Marinari, Enzo

“…The intrinsic stochasticity of gene expression is usually mitigated in higher eukaryotes by post-transcriptional regulation channels that stabilise the output…”
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Identifying essential genes in Escherichia coli from a metabolic optimization principle by Martelli, Carlotta, De Martino, Andrea, Marinari, Enzo, Marsili, Matteo, Pérez Castillo, Isaac

“…Understanding the organization of reaction fluxes in cellular metabolism from the stoichiometry and the topology of the underlying biochemical network is a…”
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Counting and correcting thermodynamically infeasible flux cycles in genome-scale metabolic networks by De Martino, Daniele, Capuani, Fabrizio, Mori, Matteo, De Martino, Andrea, Marinari, Enzo

“…Thermodynamics constrains the flow of matter in a reaction network to occur through routes along which the Gibbs energy decreases, implying that viable…”
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Localization of Denaturation Bubbles in Random DNA Sequences by Hwa, Terence, Marinari, Enzo, Sneppen, Kim, Tang, Lei-han

“…We study the thermodynamic and dynamic behaviors of twist-induced denaturation bubbles in a long, stretched random sequence of DNA. The small bubbles…”
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Frequency–frequency correlations of single-trajectory spectral densities of Gaussian processes by Squarcini, Alessio, Marinari, Enzo, Oshanin, Gleb, Peliti, Luca, Rondoni, Lamberto

“…Abstract We investigate the stochastic behavior of the single-trajectory spectral density S ( ω , T ) of several Gaussian stochastic processes, i.e., Brownian…”
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