Search Results - "Marı́n, Marı́a del Carmen"

a‑ARM: Automatic Rhodopsin Modeling with Chromophore Cavity Generation, Ionization State Selection, and External Counterion Placement by Pedraza-González, Laura, De Vico, Luca, Marı́n, Marı́a del Carmen, Fanelli, Francesca, Olivucci, Massimo

“…The Automatic Rhodopsin Modeling (ARM) protocol has recently been proposed as a tool for the fast and parallel generation of basic hybrid quantum…”
Get full text

Red-shifting mutation of light-driven sodium-pump rhodopsin by Inoue, Keiichi, del Carmen Marín, María, Tomida, Sahoko, Nakamura, Ryoko, Nakajima, Yuta, Olivucci, Massimo, Kandori, Hideki

“…Microbial rhodopsins are photoreceptive membrane proteins that transport various ions using light energy. While they are widely used in optogenetics to…”
Get full text

Fluorescence Enhancement of a Microbial Rhodopsin via Electronic Reprogramming by Marín, María del Carmen, Agathangelou, Damianos, Orozco-Gonzalez, Yoelvis, Valentini, Alessio, Kato, Yoshitaka, Abe-Yoshizumi, Rei, Kandori, Hideki, Choi, Ahreum, Jung, Kwang-Hwan, Haacke, Stefan, Olivucci, Massimo

“…The engineering of microbial rhodopsins with enhanced fluorescence is of great importance in the expanding field of optogenetics. Here we report the discovery…”
Get full text

Web-ARM: A Web-Based Interface for the Automatic Construction of QM/MM Models of Rhodopsins by Pedraza-González, Laura, Marín, María Del Carmen, Jorge, Alejandro N, Ruck, Tyler D, Yang, Xuchun, Valentini, Alessio, Olivucci, Massimo, De Vico, Luca

“…This article introduces Web-ARM, a specialized tool, online available, designed to build quantum mechanical/molecular mechanical models of rhodopsins, a widely…”
Get full text

Toward Automatic Rhodopsin Modeling as a Tool for High-Throughput Computational Photobiology by Melaccio, Federico, del Carmen Marín, María, Valentini, Alessio, Montisci, Fabio, Rinaldi, Silvia, Cherubini, Marco, Yang, Xuchun, Kato, Yoshitaka, Stenrup, Michael, Orozco-Gonzalez, Yoelvis, Ferré, Nicolas, Luk, Hoi Ling, Kandori, Hideki, Olivucci, Massimo

“…We report on a prototype protocol for the automatic and fast construction of congruous sets of QM/MM models of rhodopsin-like photoreceptors and of their…”
Get full text

Prochlorococcus can use the Pro1404 transporter to take up glucose at nanomolar concentrations in the Atlantic Ocean by del Carmen Muñoz-Marín, María, Luque, Ignacio, Zubkov, Mikhail V., Hill, Polly G., Diez, Jesús, García-Fernández, José Manuel

“…Prochlorococcus is responsible for a significant part of CO ₂ fixation in the ocean. Although it was long considered an autotrophic cyanobacterium, the uptake…”
Get full text

Open ocean and coastal strains of the N2-fixing cyanobacterium UCYN-A have distinct transcriptomes by Muñoz-Marín, María Del Carmen, Magasin, Jonathan D, Zehr, Jonathan P

“…Decades of research on marine N2 fixation focused on Trichodesmium, which are generally free-living cyanobacteria, but in recent years the endosymbiotic…”
Get full text

Vulnerability to ethanol sensitization predicts higher intake and motivation to self‐administer ethanol: Proof of the incentive salience sensitization theory? by González‐Marín, Maria del Carmen, Coune, Fabien, Naassila, Mickaël

“…Ethanol‐induced behavioral sensitization (EIBS) is thought to play a key role in addiction. However, whether EIBS is linked to an increase in the motivation to…”
Get full text

Cuff-leak test for the diagnosis of upper airway obstruction in adults: a systematic review and meta-analysis by Ochoa, Maria Elena, del Carmen Marín, Maria, Frutos-Vivar, Fernando, Gordo, Federico, Latour-Pérez, Jaime, Calvo, Enrique, Esteban, Andres

“…Purpose To evaluate, in adults, the diagnostic accuracy of the cuff-leak test for the diagnosis of upper airway obstruction secondary to laryngeal edema and…”
Get full text

The practice of intensive care in Latin America: a survey of academic intensivists by Castro, Ricardo, Nin, Nicolas, Ríos, Fernando, Alegría, Leyla, Estenssoro, Elisa, Murias, Gastón, Friedman, Gilberto, Jibaja, Manuel, Ospina-Tascon, Gustavo, Hurtado, Javier, Marín, María Del Carmen, Machado, Flavia R, Cavalcanti, Alexandre Biasi, Dubin, Arnaldo, Azevedo, Luciano, Cecconi, Maurizio, Bakker, Jan, Hernandez, Glenn

“…Intensive care medicine is a relatively young discipline that has rapidly grown into a full-fledged medical subspecialty. Intensivists are responsible for…”
Get full text

UCYN‐A3, a newly characterized open ocean sublineage of the symbiotic N2‐fixing cyanobacterium Candidatus Atelocyanobacterium thalassa by Cornejo‐Castillo, Francisco M., Muñoz‐Marín, Maria del Carmen, Turk‐Kubo, Kendra A., Royo‐Llonch, Marta, Farnelid, Hanna, Acinas, Silvia G., Zehr, Jonathan P.

“…Summary The symbiotic unicellular cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN‐A) is one of the most abundant and widespread nitrogen…”
Get full text

Transcranial direct current stimulation (tDCS) reduces motivation to drink ethanol and reacquisition of ethanol self-administration in female mice by Pedron, Solène, Dumontoy, Stéphanie, González-Marín, Maria del Carmen, Coune, Fabien, Van Schuerbeek, Andries, Haffen, Emmanuel, Naassila, Mickael, Van Waes, Vincent

“…Transcranial direct current stimulation (tDCS) is an emerging noninvasive brain neuromodulation technique aimed at relieving symptoms associated with…”
Get full text

Converting a Natural-Light-Driven Outward Proton Pump Rhodopsin into an Artificial Inward Proton Pump by Marín, María del Carmen, Konno, Masae, Yawo, Hiromu, Inoue, Keiichi

“…Microbial rhodopsins are a large family of photoreceptive membrane proteins with diverse light-regulated functions. While the most ubiquitous microbial…”
Get full text

Biophysical characterization of microbial rhodopsins with DSE motif by Marín, María del Carmen, Jaffe, Alexander L., West, Patrick T., Konno, Masae, Banfield, Jillian F., Inoue, Keiichi

“…Microbial rhodopsins are photoreceptive transmembrane proteins that transport ions or regulate other intracellular biological processes. Recent genomic and…”
Get full text

Hydrogen-Bonding and Hydrophobic Interaction Networks as Structural Determinants of Microbial Rhodopsin Function by Bertalan, Éva, Konno, Masae, del Carmen Marín, María, Bagherzadeh, Reza, Nagata, Takashi, Brown, Leonid, Inoue, Keiichi, Bondar, Ana-Nicoleta

“…Microbial pump rhodopsins are highly versatile light-driven membrane proteins that couple protein conformational dynamics with ion translocation across the…”
Get full text

Face validity of a pre‐clinical model of operant binge drinking: just a question of speed by Jeanblanc, Jérôme, Sauton, Pierre, Jeanblanc, Virginie, Legastelois, Rémi, Echeverry‐Alzate, Victor, Lebourgeois, Sophie, Gonzalez‐Marin, Maria, Naassila, Mickaël

“…Binge drinking (BD) is often defined as a large amount of alcohol consumed in a ‘short’ period of time or ‘per occasion’. In clinical research, few researchers…”
Get full text

Structural characterization of proton-pumping rhodopsin lacking a cytoplasmic proton donor residue by X-ray crystallography by Suzuki, Kano, del Carmen Marín, María, Konno, Masae, Bagherzadeh, Reza, Murata, Takeshi, Inoue, Keiichi

“…DTG/DTS rhodopsin, which was named based on a three-residue motif (DTG or DTS) that is important for its function, is a light-driven proton-pumping microbial…”
Get full text

Systematic Excited State Studies of Reversibly Switchable Fluorescent Proteins by Smyrnova, Daryna, Marín, María del Carmen, Olivucci, Massimo, Ceulemans, Arnout

“…The reversibly switchable fluorescent proteins Dronpa, rsFastLime, rsKame, Padron, and bsDronpa feature the same chromophore but display a 40 nm variation in…”
Get full text

Blue Carbon Stock in Zostera marina Meadows in the Ría de Ferrol (NW Iberian Peninsula) by de la Cerda-Marín, María del Carmen, Díaz-Agras, Guillermo, Rodríguez Tato, Ramiro, Candás Romero, María, Pérez Señarís, Marcos, de Solaun Eimil, Andrés, Otero, Xosé Luis

“…The increase in greenhouse gases (GHG) has been constant since the Industrial Revolution. For this reason, different international organizations have devoted…”
Get full text

Assessment of MC-PDFT Excitation Energies for a Set of QM/MM Models of Rhodopsins by Marín, María del Carmen, De Vico, Luca, Dong, Sijia S, Gagliardi, Laura, Truhlar, Donald G, Olivucci, Massimo

“…A methodology for the automatic production of quantum mechanical/molecular mechanical (QM/MM) models of retinal-binding rhodopsin proteins and subsequent…”
Get full text