Search Results - "Mandula, Ondřej"

PyNX.Ptycho: a computing library for X-ray coherent diffraction imaging of nanostructures by Mandula, Ondřej, Elzo Aizarna, Marta, Eymery, Joël, Burghammer, Manfred, Favre-Nicolin, Vincent

“…X‐ray imaging techniques have undergone a remarkable development during the past decade, taking advantage of coherent X‐ray sources. Among these techniques,…”
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Line scan--structured illumination microscopy super-resolution imaging in thick fluorescent samples by Mandula, Ondrej, Kielhorn, Martin, Wicker, Kai, Krampert, Gerhard, Kleppe, Ingo, Heintzmann, Rainer

“…Structured illumination microscopy in thick fluorescent samples is a challenging task. The out-of-focus fluorescence background deteriorates the illumination…”
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Phase and fluorescence imaging with a surprisingly simple microscope based on chromatic aberration by Mandula, Ondřej, Kleman, Jean-Philippe, Lacroix, Françoise, Allier, Cedric, Fiole, Daniel, Hervé, Lionel, Blandin, Pierre, Kraemer, Dorothee C, Morales, Sophie

“…We propose a simple and compact microscope combining phase imaging with multi-color fluorescence using a standard bright-field objective. The phase image of…”
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Structured illumination microscopy of a living cell by Hirvonen, Liisa M., Wicker, Kai, Mandula, Ondrej, Heintzmann, Rainer

“…Due to diffraction, the resolution of imaging emitted light in a fluorescence microscope is limited to about 200 nm in the lateral direction. Resolution…”
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Localisation microscopy with quantum dots using non-negative matrix factorisation by Mandula, Ondřej, Šestak, Ivana Šumanovac, Heintzmann, Rainer, Williams, Christopher K I

“…We propose non-negative matrix factorisation with iterative restarts (iNMF) to model a noisy dataset of highly overlapping fluorophores with intermittent…”
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Ultrafast and Multiplexed Bacteriophage Susceptibility Testing by Surface Plasmon Resonance and Phase Imaging of Immobilized Phage Microarrays by O'Connell, Larry, Mandula, Ondrej, Leroy, Loïc, Aubert, Axelle, Marcoux, Pierre R., Roupioz, Yoann

“…In the context of bacteriophage (phage) therapy, there is an urgent need for a method permitting multiplexed, parallel phage susceptibility testing (PST) prior…”
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t-SNARE Protein Conformations Patterned by the Lipid Microenvironment by Rickman, Colin, Medine, Claire N., Dun, Alison R., Moulton, David J., Mandula, Ondřej, Halemani, Nagaraj D., Rizzoli, Silvio O., Chamberlain, Luke H., Duncan, Rory R.

“…The spatial distribution of the target (t-)SNARE proteins (syntaxin and SNAP-25) on the plasma membrane has been extensively characterized. However, the…”
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CNN-Based Cell Analysis: From Image to Quantitative Representation by Allier, Cédric, Hervé, Lionel, Paviolo, Chiara, Mandula, Ondrej, Cioni, Olivier, Pierré, William, Andriani, Francesca, Padmanabhan, Kiran, Morales, Sophie

“…We present a novel deep learning-based quantification pipeline for the analysis of cell culture images acquired by lens-free microscopy. The image…”
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Phase optimisation for structured illumination microscopy by Wicker, Kai, Mandula, Ondrej, Best, Gerrit, Fiolka, Reto, Heintzmann, Rainer

“…Structured illumination microscopy can achieve super-resolution in fluorescence imaging. The sample is illuminated with periodic light patterns, and a series…”
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Confinement-Induced Transition between Wavelike Collective Cell Migration Modes by Petrolli, Vanni, Le Goff, Magali, Tadrous, Monika, Martens, Kirsten, Allier, Cédric, Mandula, Ondrej, Hervé, Lionel, Henkes, Silke, Sknepnek, Rastko, Boudou, Thomas, Cappello, Giovanni, Balland, Martial

“…The structural and functional organization of biological tissues relies on the intricate interplay between chemical and mechanical signaling. Whereas the role…”
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3D time-lapse imaging of a mouse embryo using intensity diffraction tomography embedded inside a deep learning framework by Pierré, William, Hervé, Lionel, Paviolo, Chiara, Mandula, Ondrej, Remondiere, Vincent, Morales, Sophie, Grudinin, Sergei, Ray, Pierre F, Dhellemmes, Magali, Arnoult, Christophe, Allier, Cédric

“…We present a compact 3D diffractive microscope that can be inserted directly in a cell incubator for long-term observation of developing organisms. Our setup…”
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Lens-free microscopy for 3D + time acquisitions of 3D cell culture by Berdeu, Anthony, Laperrousaz, Bastien, Bordy, Thomas, Mandula, Ondrej, Morales, Sophie, Gidrol, Xavier, Picollet-D’hahan, Nathalie, Allier, Cédric

“…Thanks to a novel three-dimensional imaging platform based on lens-free microscopy, it is possible to perform multi-angle acquisitions and holographic…”
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Confinement-induced transition between wave-like collective cell migration modes by Petrolli, Vanni, Le Goff, Magali, Tadrous, Monika, Martens, Kirsten, Allier, Cédric, Mandula, Ondrej, Hervé, Lionel, Henkes, Silke, Sknepnek, Rastko, Boudou, Thomas, Cappello, Giovanni, Balland, Martial

“…The structural and functional organization of biological tissues relies on the intricate interplay between chemical and mechanical signaling. Whereas the role…”
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X-ray imaging of single semi-conductor nanostructures for photonics and electronics by Favre-Nicolin, Vincent, Girard, Gaétan, Eymery, Joël, Leake, Steven, Mandula, Ondrej, Elzo-Aizarna, Marta, Andrieu, François, Berthelon, Remy, Gerard, Jean-Michel, Claudon, Julien

“…Abstract only…”
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X-ray nano-diffraction of semiconductor nano-structures for photonic and electronic applications by Favre-Nicolin, Vincent, Elzo Aizarna, Marta, Mandula, Ondrej, Mastropietro, Francesca, Carbone, Gerardina, Andrieu, François, Claudon, Julien, Gerard, Jean-Michel

“…Abstract only…”
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X-ray imaging of single nano-structures: from focused beams to coherent imaging and ptychography by Favre-Nicolin, Vincent, Mandula, Ondrej, Aizarna, Marta Elzo, Eymery, Joel, Mastropietro, Francesca, Carbone, Gerardina, Andrieu, Francois, Claudon, Julien, Gerard, Jean-Michel

“…Abstract only…”
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Green Gut: Chlorophyll Degradation in the Gut of Spodoptera littoralis by Badgaa, Amarsanaa, Büchler, Rita, Wielsch, Natalie, Walde, Marie, Heintzmann, Rainer, Pauchet, Yannik, Svatos, Ales, Ploss, Kerstin, Boland, Wilhelm

“…Chlorophylls, the most prominent natural pigments, are part of the daily diet of herbivorous insects. The spectrum of ingested and digested chlorophyll…”
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Super-resolution methods for fluorescence microscopy by Mandula, Ondrej

“…Fluorescence microscopy is an important tool for biological research. However, the resolution of a standard fluorescence microscope is limited by diffraction,…”
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Structured Illumination and Image Inversion Interferometry by Wicker, Kai, Walde, Marie, Oldewurtel, Enno R., Hirvonen, Liisa, Mandula, Ondrej, Sindbert, Simon, Heintzmann, Rainer

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