Search Results - "Malkov, Saša N."
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What are the preferred horizontal displacements of aromatic-aromatic interactions in proteins? Comparison with the calculated benzene-benzene potential energy surface
Published in Physical chemistry chemical physics : PCCP (21-06-2014)“…The data from protein structures from the Protein Data Bank and quantum chemical calculations indicate the importance of aromatic-aromatic interactions at…”
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Structural disorder of plasmid-encoded proteins in Bacteria and Archaea
Published in BMC bioinformatics (25-04-2018)“…In the last decade and a half it has been firmly established that a large number of proteins do not adopt a well-defined (ordered) structure under…”
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What are preferred water-aromatic interactions in proteins and crystal structures of small molecules?
Published in Physical chemistry chemical physics : PCCP (01-01-2014)“…The distribution of water molecules around aromatic rings in the protein structures and crystal structures of small molecules shows quite a small number of the…”
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Entropy-driven translocation of disordered proteins through the Gram-positive bacterial cell wall
Published in Nature microbiology (01-08-2021)“…In Gram-positive bacteria, a thick cross-linked cell wall separates the membrane from the extracellular space. Some surface-exposed proteins, such as the…”
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A reexamination of the propensities of amino acids towards a particular secondary structure: classification of amino acids based on their chemical structure
Published in Journal of molecular modeling (01-08-2008)“…The correlation between the primary and secondary structures of proteins was analysed using a large data set from the Protein Data Bank. Clear preferences of…”
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Customizing a functional programming language for web development
Published in Computer languages, systems & structures (01-12-2010)“…The characteristics of functional programming languages recommend them for web development. We checked that in practice, by customizing the functional…”
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Bioinformatics analysis of disordered proteins in prokaryotes
Published in BMC bioinformatics (02-03-2011)“…A significant number of proteins have been shown to be intrinsically disordered, meaning that they lack a fixed 3 D structure or contain regions that do not…”
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Plant regeneration in leaf culture of Centaurium erythraea Rafn. Part 2: the role of arabinogalactan proteins
Published in Plant cell, tissue and organ culture (01-06-2015)“…Arabinogalactan proteins (AGPs) are cell wall hydroxyproline-rich glycoproteins with diverse functions in plant growth and development. In this work the role…”
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A Reexamination of Correlations of Amino Acids with Particular Secondary Structures
Published in The Protein Journal (01-02-2009)“…Using the data from Protein Data Bank the correlations of primary and secondary structures of proteins were analyzed. The correlation values of the amino acids…”
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