Search Results - "Malandain, Grégoire"

In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level by McDole, Katie, Guignard, Léo, Amat, Fernando, Berger, Andrew, Malandain, Grégoire, Royer, Loïc A., Turaga, Srinivas C., Branson, Kristin, Keller, Philipp J.

“…The mouse embryo has long been central to the study of mammalian development; however, elucidating the cell behaviors governing gastrulation and the formation…”
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Contact area–dependent cell communication and the morphological invariance of ascidian embryogenesis by Guignard, Léo, Fiúza, Ulla-Maj, Leggio, Bruno, Laussu, Julien, Faure, Emmanuel, Michelin, Gaël, Biasuz, Kilian, Hufnagel, Lars, Malandain, Grégoire, Godin, Christophe, Lemaire, Patrick

“…Cell-cell contacts specify cell fate Ascidians, or sea squirts, are marine invertebrate filter feeders with highly reproducible cellular events and invariant…”
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Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution by Godin, Christophe, Fernandez, Romain, Das, Pradeep, Mirabet, Vincent, Moscardi, Eric, Traas, Jan, Verdeil, Jean-Luc, Malandain, Grégoire

“…A set of computational and imaging approaches, called MARS-ALT, permits three-dimensional tracking of plant tissue development, including cell lineaging, at…”
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Embryo-scale epithelial buckling forms a propagating furrow that initiates gastrulation by Fierling, Julien, John, Alphy, Delorme, Barthélémy, Torzynski, Alexandre, Blanchard, Guy B., Lye, Claire M., Popkova, Anna, Malandain, Grégoire, Sanson, Bénédicte, Étienne, Jocelyn, Marmottant, Philippe, Quilliet, Catherine, Rauzi, Matteo

“…Cell apical constriction driven by actomyosin contraction forces is a conserved mechanism during tissue folding in embryo development. While much is now…”
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A multiscale analysis of early flower development in Arabidopsis provides an integrated view of molecular regulation and growth control by Refahi, Yassin, Zardilis, Argyris, Michelin, Gaël, Wightman, Raymond, Leggio, Bruno, Legrand, Jonathan, Faure, Emmanuel, Vachez, Laetitia, Armezzani, Alessia, Risson, Anne-Evodie, Zhao, Feng, Das, Pradeep, Prunet, Nathanaël, Meyerowitz, Elliot M., Godin, Christophe, Malandain, Grégoire, Jönsson, Henrik, Traas, Jan

“…We have analyzed the link between the gene regulation and growth during the early stages of flower development in Arabidopsis. Starting from time-lapse images,…”
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A stochastic framework to model axon interactions within growing neuronal populations by Razetti, Agustina, Medioni, Caroline, Malandain, Grégoire, Besse, Florence, Descombes, Xavier

“…The confined and crowded environment of developing brains imposes spatial constraints on neuronal cells that have evolved individual and collective strategies…”
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Atlas-based delineation of lymph node levels in head and neck computed tomography images by Commowick, Olivier, Grégoire, Vincent, Malandain, Grégoire

“…Abstract Purpose Radiotherapy planning requires accurate delineations of the tumor and of the critical structures. Atlas-based segmentation has been shown to…”
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A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data by Yelnik, Jérôme, Bardinet, Eric, Dormont, Didier, Malandain, Grégoire, Ourselin, Sébastien, Tandé, Dominique, Karachi, Carine, Ayache, Nicholas, Cornu, Philippe, Agid, Yves

“…This paper describes the construction of an atlas of the human basal ganglia. The successive steps of the construction were as follows. First a postmortem…”
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Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge by Murphy, Keelin, van Ginneken, Bram, Reinhardt, Joseph M., Kabus, Sven, Ding, Kai, Deng, Xiang, Cao, Kunlin, Du, Kaifang, Christensen, Gary E., Garcia, Vincent, Vercauteren, Tom, Ayache, Nicholas, Commowick, Olivier, Malandain, Grégoire, Glocker, Ben, Paragios, Nikos, Navab, Nassir, Gorbunova, Vladlena, Sporring, Jon, de Bruijne, Marleen, Han, Xiao, Heinrich, Mattias P., Schnabel, Julia A., Jenkinson, Mark, Lorenz, Cristian, Modat, Marc, McClelland, Jamie R., Ourselin, Sébastien, Muenzing, Sascha E. A., Viergever, Max A., De Nigris, Dante, Collins, D. Louis, Arbel, Tal, Peroni, Marta, Li, Rui, Sharp, Gregory C., Schmidt-Richberg, Alexander, Ehrhardt, Jan, Werner, René, Smeets, Dirk, Loeckx, Dirk, Song, Gang, Tustison, Nicholas, Avants, Brian, Gee, James C., Staring, Marius, Klein, Stefan, Stoel, Berend C., Urschler, Martin, Werlberger, Manuel, Vandemeulebroucke, Jef, Rit, Simon, Sarrut, David, Pluim, Josien P. W.

“…EMPIRE10 (Evaluation of Methods for Pulmonary Image REgistration 2010) is a public platform for fair and meaningful comparison of registration algorithms which…”
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Evaluation of an atlas-based automatic segmentation software for the delineation of brain organs at risk in a radiation therapy clinical context by Isambert, Aurélie, Dhermain, Frédéric, Bidault, François, Commowick, Olivier, Bondiau, Pierre-Yves, Malandain, Grégoire, Lefkopoulos, Dimitri

“…Abstract Background and purpose Conformal radiation therapy techniques require the delineation of volumes of interest, a time-consuming and operator-dependent…”
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Age-related changes in FDG brain uptake are more accurately assessed when applying an adaptive template to the SPM method of voxel-based quantitative analysis by Van Der Gucht, Axel, Verger, Antoine, Guedj, Eric, Malandain, Grégoire, Hossu, Gabriela, Yagdigul, Yalcin, Roch, Véronique, Poussier, Sylvain, Maillard, Louis, Karcher, Gilles, Marie, Pierre-Yves

“…Introduction The impact of age is crucial and must be taken into account when applying a voxel-based quantitative analysis on brain images from [ 18…”
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Piecewise affine registration of biological images for volume reconstruction by Pitiot, Alain, Bardinet, Eric, Thompson, Paul M., Malandain, Grégoire

“…This manuscript tackles the reconstruction of 3-D volumes via mono-modal registration of series of 2-D biological images (histological sections,…”
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Atlas-based automatic segmentation of MR images: validation study on the brainstem in radiotherapy context by Bondiau, Pierre-Yves, Malandain, Grégoire, Chanalet, Stéphane, Marcy, Pierre-Yves, Habrand, Jean-Louis, Fauchon, François, Paquis, Philippe, Courdi, Adel, Commowick, Olivier, Rutten, Isabelle, Ayache, Nicholas

“…Brain tumor radiotherapy requires the volume measurements and the localization of several individual brain structures. Any tool that can assist the physician…”
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A low temperature embedding and section registration strategy for 3D image reconstruction of the rat brain from autoradiographic sections by Simonetti, Arjan W., Elezi, Vedat A., Farion, Régine, Malandain, Grégoire, Segebarth, Christoph, Rémy, Chantal, Barbier, Emmanuel L.

“…In studies on animal models of human brain pathologies, three-dimensional reconstruction from histological sections is particularly useful when assessing the…”
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Robust Plant Cell Tracking in Fluorescence Microscopy 3D+T Series by Petit, Manuel, Cerutti, Guillaume, Godin, Christophe, Malandain, Gregoire

“…Automatic tracking of cell deformation during development using time-lapse confocal microscopy is a challenging task. In plant cell tissues, large deformations…”
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Efficient selection of the most similar image in a database for critical structures segmentation by Commowick, Olivier, Malandain, Grégoire

“…Radiotherapy planning needs accurate delineations of the critical structures. Atlas-based segmentation has been shown to be very efficient to delineate brain…”
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A tree-topology preserving pairing for 3D/2D registration by Benseghir, Thomas, Malandain, Grégoire, Vaillant, Régis

“…Purpose Fusing preoperative and intra-operative information into a single space aims at taking advantage of two complementary modalities and necessitates a…”
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Planar cell polarity genes frizzled4 and frizzled6 exert patterning influence on arterial vessel morphogenesis by Markovič, Rene, Peltan, Julien, Gosak, Marko, Horvat, Denis, Žalik, Borut, Seguy, Benjamin, Chauvel, Remi, Malandain, Gregoire, Couffinhal, Thierry, Duplàa, Cécile, Marhl, Marko, Roux, Etienne

“…Quantitative analysis of the vascular network anatomy is critical for the understanding of the vasculature structure and function. In this study, we have…”
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A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease by Bardinet, Eric, Bhattacharjee, Manik, Dormont, Didier, Pidoux, Bernard, Malandain, Grégoire, Schüpbach, Michael, Ayache, Nicholas, Cornu, Philippe, Agid, Yves, Yelnik, Jérôme

“…The localization of any given target in the brain has become a challenging issue because of the increased use of deep brain stimulation to treat Parkinson…”
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Robust mosaicing with correction of motion distortions and tissue deformations for in vivo fibered microscopy by Vercauteren, Tom, Perchant, Aymeric, Malandain, Grégoire, Pennec, Xavier, Ayache, Nicholas

“…Real-time in vivo and in situ imaging at the cellular level can be achieved with fibered confocal microscopy. As interesting as dynamic sequences may be, there…”
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