Search Results - "Makarov, E."

Long-lived metastable knots in polyampholyte chains by Ozmaian, Masoumeh, Makarov, Dmitrii E

“…Knots in proteins and DNA are known to have significant effect on their equilibrium and dynamic properties as well as on their function. While knot dynamics…”
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Transition Path Times in Non-Markovian Activated Rate Processes by Medina, Eduardo, Satija, Rohit, Makarov, Dmitrii E

“…Transition paths are brief excursions taken by molecules when they cross barriers separating stable molecular conformations. When observed in single-molecule…”
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Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding by Satija, Rohit, Das, Atanu, Makarov, Dmitrii E

“…Recent single-molecule experiments probed transition paths of biomolecular folding and, in particular, measured the time biomolecules spend while crossing…”
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Integrated view of internal friction in unfolded proteins from single-molecule FRET, contact quenching, theory, and simulations by Soranno, Andrea, Holla, Andrea, Dingfelder, Fabian, Nettels, Daniel, Makarov, Dmitrii E., Schuler, Benjamin

“…Internal friction is an important contribution to protein dynamics at all stages along the folding reaction. Even in unfolded and intrinsically disordered…”
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New Limit for Neutrinoless Double-Beta Decay of 100Mo from the CUPID-Mo Experiment by Armengaud, E, Augier, C, Barabash, A S, Bellini, F, Benato, G, Benoît, A, Beretta, M, Bergé, L, Billard, J, Borovlev, Yu A, Bourgeois, Ch, Brudanin, V B, Camus, P, Cardani, L, Casali, N, Cazes, A, Chapellier, M, Charlieux, F, Chiesa, D, de Combarieu, M, Dafinei, I, Danevich, F A, De Jesus, M, Dixon, T, Dumoulin, L, Eitel, K, Ferri, F, Fujikawa, B K, Gascon, J, Gironi, L, Giuliani, A, Grigorieva, V D, Gros, M, Guerard, E, Helis, D L, Huang, H Z, Huang, R, Johnston, J, Juillard, A, Khalife, H, Kleifges, M, Kobychev, V V, Kolomensky, Yu G, Konovalov, S I, Leder, A, Loaiza, P, Ma, L, Makarov, E P, de Marcillac, P, Mariam, R, Marini, L, Marnieros, S, Misiak, D, Navick, X-F, Nones, C, Norman, E B, Novati, V, Olivieri, E, Ouellet, J L, Pagnanini, L, Pari, P, Pattavina, L, Paul, B, Pavan, M, Peng, H, Pessina, G, Pirro, S, Poda, D V, Polischuk, O G, Pozzi, S, Previtali, E, Redon, Th, Rojas, A, Rozov, S, Rusconi, C, Sanglard, V, Scarpaci, J A, Schäffner, K, Schmidt, B, Shen, Y, Shlegel, V N, Siebenborn, B, Singh, V, Tomei, C, Tretyak, V I, Umatov, V I, Vagneron, L, Velázquez, M, Welliver, B, Winslow, L, Xue, M, Yakushev, E, Zarytskyy, M, Zolotarova, A S

“…The CUPID-Mo experiment at the Laboratoire Souterrain de Modane (France) is a demonstrator for CUPID, the next-generation ton-scale bolometric 0νββ experiment…”
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Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy by Soranno, Andrea, Buchli, Brigitte, Nettels, Daniel, Cheng, Ryan R, Müller-Späth, Sonja, Pfeil, Shawn H, Hoffmann, Armin, Lipman, Everett A, Makarov, Dmitrii E, Schuler, Benjamin

“…Internal friction, which reflects the “roughness” of the energy landscape, plays an important role for proteins by modulating the dynamics of their folding and…”
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From Nonequilibrium Single-Molecule Trajectories to Underlying Dynamics by Berezhkovskii, Alexander M, Makarov, Dmitrii E

“…Single-molecule observations of biomolecular dynamics and folding are commonly rationalized using the model of diffusive dynamics on a free-energy landscape,…”
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Transition path times of coupled folding and binding reveal the formation of an encounter complex by Sturzenegger, Flurin, Zosel, Franziska, Holmstrom, Erik D., Buholzer, Karin J., Makarov, Dmitrii E., Nettels, Daniel, Schuler, Benjamin

“…The association of biomolecules is the elementary event of communication in biology. Most mechanistic information of how the interactions between binding…”
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Molecular Catch Bonds and the Anti-Hammond Effect in Polymer Mechanochemistry by Konda, Sai Sriharsha M, Brantley, Johnathan N, Varghese, Bibin T, Wiggins, Kelly M, Bielawski, Christopher W, Makarov, Dmitrii E

“…While the field of polymer mechanochemistry has traditionally focused on the use of mechanical forces to accelerate chemical processes, theoretical…”
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Extracting intrinsic dynamic parameters of biomolecular folding from single‐molecule force spectroscopy experiments by Nam, Gi‐Moon, Makarov, Dmitrii E.

“…Single‐molecule studies in which a mechanical force is transmitted to the molecule of interest and the molecular extension or position is monitored as a…”
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Theoretical and computational validation of the Kuhn barrier friction mechanism in unfolded proteins by Avdoshenko, Stanislav M., Das, Atanu, Satija, Rohit, Papoian, Garegin A., Makarov, Dmitrii E.

“…A long time ago, Kuhn predicted that long polymers should approach a limit where their global motion is controlled by solvent friction alone, with ruggedness…”
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On distributions of barrier crossing times as observed in single-molecule studies of biomolecules by Berezhkovskii, Alexander M., Makarov, Dmitrii E.

“…Single-molecule experiments that monitor time evolution of molecular observables in real time have expanded beyond measuring transition rates toward measuring…”
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The Results of Long-Term Observations of Electric Fields in the Atmosphere during the 2018‒2020 Eruption of Ebeko Volcano by Akbashev, R. R., Makarov, E. O.

“…The gradient of potential in the atmospheric electric field was recorded in the town of Severo-Kurilsk in order to study the formation of 3D electric charges…”
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Time-resolved burst variance analysis by Terterov, Ivan, Nettels, Daniel, Makarov, Dmitrii E., Hofmann, Hagen

“…Quantifying biomolecular dynamics has become a major task of single-molecule fluorescence spectroscopy methods. In single-molecule Förster resonance energy…”
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A Theoretical Model for the Mechanical Unfolding of Repeat Proteins by Makarov, Dmitrii E.

“…We consider the mechanical stretching of a polypeptide chain formed by multiple interacting repeats. The folding thermodynamics and the interactions among the…”
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Isolation and characterization of a glyphosate-degrading rhizosphere strain, Enterobacter cloacae K7 by Kryuchkova, Yelena V., Burygin, Gennady L., Gogoleva, Natalia E., Gogolev, Yuri V., Chernyshova, Marina P., Makarov, Oleg E., Fedorov, Evgenii E., Turkovskaya, Olga V.

“…Plant-growth-promoting rhizobacteria exert beneficial effects on plants through their capacity for nitrogen fixation, phytohormone production, phosphate…”
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Searching for beyond the Standard Model physics using the improved description of 100Mo 2νββ decay spectral shape with CUPID-Mo by Augier, C., Barabash, A. S., Bellini, F., Benato, G., Beretta, M., Bergé, L., Billard, J., Borovlev, Yu. A., Cardani, L., Casali, N., Cazes, A., Celi, E., Chapellier, M., Chiesa, D., Dafinei, I., Danevich, F. A., De Jesus, M., Dixon, T., Dumoulin, L., Eitel, K., Ferri, F., Fujikawa, B. K., Gascon, J., Gironi, L., Giuliani, A., Grigorieva, V. D., Gros, M., Helis, D. L., Huang, H. Z., Huang, R., Imbert, L., Juillard, A., Khalife, H., Kleifges, M., Kobychev, V. V., Kolomensky, Yu. G., Konovalov, S. I., Kotila, J., Loaiza, P., Ma, L., Makarov, E. P., de Marcillac, P., Mariam, R., Marini, L., Marnieros, S., Navick, X. F., Nones, C., Norman, E. B., Olivieri, E., Ouellet, J. L., Pagnanini, L., Pattavina, L., Paul, B., Pavan, M., Peng, H., Pessina, G., Pirro, S., Poda, D. V., Polischuk, O. G., Pozzi, S., Previtali, E., Redon, Th, Rojas, A., Rozov, S., Sanglard, V., Scarpaci, J. A., Schmidt, B., Shen, Y., Shlegel, V. N., Šimkovic, F., Singh, V., Tomei, C., Tretyak, V. I., Umatov, V. I., Vagneron, L., Velázquez, M., Ware, B., Welliver, B., Winslow, L., Xue, M., Yakushev, E., Zarytskyy, M., Zolotarova, A. S.

“…The current experiments searching for neutrinoless double- β ( 0 ν β β ) decay also collect large statistics of Standard Model allowed two-neutrino double- β (…”
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On Γ-limit classes of perturbations defined by integral conditions by Makarov, E. K.

“…For the coefficients of linear differential systems, we consider classes of piecewise continuous perturbations that are infinitesimal in mean on the positive…”
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The topomer search model: A simple, quantitative theory of two‐state protein folding kinetics by Makarov, Dmitrii E., Plaxco, Kevin W.

“…Most small, single‐domain proteins fold with the uncomplicated, single‐exponential kinetics expected for diffusion on a smooth energy landscape. Despite this…”
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The background model of the CUPID-Mo 0νββ experiment by Augier, C., Barabash, A. S., Bellini, F., Benato, G., Beretta, M., Bergé, L., Billard, J., Borovlev, Yu. A., Cardani, L., Casali, N., Cazes, A., Celi, E., Chapellier, M., Chiesa, D., Dafinei, I., Danevich, F. A., De Jesus, M., de Marcillac, P., Dixon, T., Dumoulin, L., Eitel, K., Ferri, F., Fujikawa, B. K., Gascon, J., Gironi, L., Giuliani, A., Grigorieva, V. D., Gros, M., Helis, D. L., Huang, H. Z., Huang, R., Imbert, L., Johnston, J., Juillard, A., Khalife, H., Kleifges, M., Kobychev, V. V., Kolomensky, Yu. G., Konovalov, S. I., Kotila, J., Loaiza, P., Ma, L., Makarov, E. P., Mariam, R., Marini, L., Marnieros, S., Navick, X.-F., Nones, C., Norman, E. B., Olivieri, E., Ouellet, J. L., Pagnanini, L., Pattavina, L., Paul, B., Pavan, M., Peng, H., Pessina, G., Pirro, S., Poda, D. V., Polischuk, O. G., Pozzi, S., Previtali, E., Redon, Th, Rojas, A., Rozov, S., Sanglard, V., Scarpaci, J. A., Schmidt, B., Shen, Y., Shlegel, V. N., Singh, V., Tomei, C., Tretyak, V. I., Umatov, V. I., Vagneron, L., Velázquez, M., Welliver, B., Winslow, L., Xue, M., Yakushev, E., Zarytskyy, M., Zolotarova, A. S.

“…CUPID-Mo, located in the Laboratoire Souterrain de Modane (France), was a demonstrator for the next generation 0 ν β β decay experiment, CUPID. It consisted of…”
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