Search Results - "Maggs, A C"
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Fast, approximation-free molecular simulation of the SPC/Fw water model using non-reversible Markov chains
Published in Scientific reports (16-07-2024)“…In a world made of atoms, computer simulations of molecular systems such as proteins in water play an enormous role in science. Software packages for molecular…”
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2
Sparse Hard-Disk Packings and Local Markov Chains
Published in Journal of statistical physics (01-06-2022)“…We propose locally stable sparse hard-disk packings, as introduced by Böröczky, as a model for the analysis and benchmarking of Markov-chain Monte Carlo (MCMC)…”
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3
Nonequilibrium Tuning of the Thermal Casimir Effect
Published in Physical review letters (17-06-2016)“…In net-neutral systems correlations between charge fluctuations generate strong attractive thermal Casimir forces and engineering these forces to optimize…”
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4
Energy gaps in quantum first-order mean-field–like transitions: The problems that quantum annealing cannot solve
Published in Europhysics letters (01-02-2010)“…We study first-order quantum phase transitions in models where the mean-field treatment is exact, and in particular the exponentially fast closure of the…”
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5
Designs from the deep: Marine organisms for bone tissue engineering
Published in Biotechnology advances (01-11-2011)“…Current strategies for bone repair have accepted limitations and the search for synthetic graft materials or for scaffolds that will support ex vivo bone…”
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6
Convexity and Stiffness in Energy Functions for Electrostatic Simulations
Published in Journal of chemical theory and computation (14-04-2015)“…We study the properties of convex functionals which have been proposed for the simulation of charged molecular systems within the Poisson–Boltzmann…”
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7
Self-organization of microtubules and motors
Published in Nature (London) (18-09-1997)“…Cellular structures are established and maintained through a dynamic interplay between assembly and regulatory processes. Self-organization of molecular…”
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Congruence between nuclear and mitochondrial genes in Demospongiae: A new hypothesis for relationships within the G4 clade (Porifera: Demospongiae)
Published in Molecular phylogenetics and evolution (01-01-2012)“…[Display omitted] ► Classification of Demospongiae G4 group was tested using rRNA and CO1 sequences. ► This is the most comprehensive study of the Demospongiae…”
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9
Local molecular dynamics with Coulombic interactions
Published in Physical review letters (22-10-2004)“…We propose a local, O(N) molecular dynamics algorithm for the simulation of charged systems. The long ranged Coulomb potential is generated by a propagating…”
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10
Non-reversible Monte Carlo: An example of “true” self-repelling motion
Published in Europhysics letters (01-08-2024)“…Abstract We link the large-scale dynamics of non-reversible Monte Carlo algorithms as well as a lifted TASEP to an exactly soluble model of self-repelling…”
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11
Collective dispersion forces in the fluid state
Published in Europhysics letters (01-09-2010)“…Dispersion interactions lead to effective many-body interactions which go beyond the approximation of pair potentials widely used in modeling of materials,…”
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12
Local simulation algorithms for Coulomb interactions
Published in Physical review letters (13-05-2002)“…Long ranged electrostatic interactions are time consuming to calculate in molecular dynamics and Monte Carlo simulations. We introduce an algorithmic framework…”
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13
Simulating nanoscale dielectric response
Published in Physical review letters (16-06-2006)“…We introduce a constrained energy functional to describe dielectric response. We demonstrate that the local functional is a generalization of the long-ranged…”
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14
Structural interactions in ionic liquids linked to higher-order Poisson-Boltzmann equations
Published in Physical review. E, Statistical, nonlinear, and soft matter physics (01-06-2017)“…We present a derivation of generalized Poisson-Boltzmann equations starting from classical theories of binary fluid mixtures, employing an approach based on…”
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15
Phase Separation by Entanglement of Active Polymerlike Worms
Published in Physical review letters (22-05-2020)“…We investigate the aggregation and phase separation of thin, living T. tubifex worms that behave as active polymers. Randomly dispersed active worms…”
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16
Anisotropic elasticity in confocal studies of colloidal crystals
Published in The European physical journal. E, Soft matter and biological physics (01-10-2011)“…We consider the theory of fluctuations of a colloidal solid observed in a confocal slice. For a cubic crystal we study the evolution of the projected elastic…”
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Flexibility of actin filaments derived from thermal fluctuations. Effect of bound nucleotide, phalloidin, and muscle regulatory proteins
Published in The Journal of biological chemistry (12-05-1995)“…Single actin filaments undergoing brownian movement in two dimensions were observed at 20 degrees C in fluorescence optical video microscopy. The persistence…”
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18
Solving fluctuation-enhanced Poisson–Boltzmann equations
Published in Journal of computational physics (15-10-2014)“…Electrostatic correlations and fluctuations in ionic systems can be described within an extended Poisson–Boltzmann theory using a Gaussian variational form…”
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Thermal preparation of highly porous calcium phosphate bone filler derived from marine algae
Published in Journal of materials science. Materials in medicine (01-08-2010)“…A sustainable marine-derived bioceramic with a unique porous structure has been developed for hard tissue repair. The conversion of alga was achieved through a…”
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Journal Article Conference Proceeding -
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Viscoelasticity of solutions of motile polymers
Published in Physical review letters (30-04-2001)“…We explore the linear viscoelastic response of an entangled, isotropic solution of polar semiflexible polymers with active, motile centers which generate…”
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