Search Results - "Mac Donagh, Juan"

ELM—the Eukaryotic Linear Motif resource—2024 update by Kumar, Manjeet, Michael, Sushama, Alvarado-Valverde, Jesús, Zeke, András, Lazar, Tamas, Glavina, Juliana, Nagy-Kanta, Eszter, Donagh, Juan Mac, Kalman, Zsofia E, Pascarelli, Stefano, Palopoli, Nicolas, Dobson, László, Suarez, Carmen Florencia, Van Roey, Kim, Krystkowiak, Izabella, Griffin, Juan Esteban, Nagpal, Anurag, Bhardwaj, Rajesh, Diella, Francesca, Mészáros, Bálint, Dean, Kellie, Davey, Norman E, Pancsa, Rita, Chemes, Lucía B, Gibson, Toby J

“…Abstract Short Linear Motifs (SLiMs) are the smallest structural and functional components of modular eukaryotic proteins. They are also the most abundant,…”
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Structured Tandem Repeats in Protein Interactions by Mac Donagh, Juan, Marchesini, Abril, Spiga, Agostina, Fallico, Maximiliano José, Arrías, Paula Nazarena, Monzon, Alexander Miguel, Vagiona, Aimilia-Christina, Gonçalves-Kulik, Mariane, Mier, Pablo, Andrade-Navarro, Miguel A

“…Tandem repeats (TRs) in protein sequences are consecutive, highly similar sequence motifs. Some types of TRs fold into structural units that pack together in…”
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Impact of protein conformational diversity on AlphaFold predictions by Saldaño, Tadeo, Escobedo, Nahuel, Marchetti, Julia, Zea, Diego Javier, Mac Donagh, Juan, Velez Rueda, Ana Julia, Gonik, Eduardo, García Melani, Agustina, Novomisky Nechcoff, Julieta, Salas, Martín N, Peters, Tomás, Demitroff, Nicolás, Fernandez Alberti, Sebastian, Palopoli, Nicolas, Fornasari, Maria Silvina, Parisi, Gustavo

“…After the outstanding breakthrough of AlphaFold in predicting protein 3D models, new questions appeared and remain unanswered. The ensemble nature of proteins,…”
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Impact of protein conformational diversity on AlphaFold predictions by Saldaño, Tadeo, Escobedo, Nahuel, Marchetti, Julia, Zea, Diego Javier, Mac Donagh, Juan, Velez Rueda, Ana Julia, Gonik, Eduardo, García Melani, Agustina, Novomisky Nechcoff, Julieta, Salas, Martín N, Peters, Tomás, Demitroff, Nicolás, Fernandez Alberti, Sebastian, Palopoli, Nicolas, Fornasari, Maria Silvina, Parisi, Gustavo

“…Abstract Motivation After the outstanding breakthrough of AlphaFold in predicting protein 3D models, new questions appeared and remain unanswered. The ensemble…”
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Revealing Missing Protein–Ligand Interactions Using AlphaFold Predictions by Escobedo, Nahuel, Saldaño, Tadeo, Mac Donagh, Juan, Sawicki, Luciana Rodriguez, Palopoli, Nicolas, Alberti, Sebastian Fernandez, Fornasari, Maria Silvina, Parisi, Gustavo

“…[Display omitted] •AlphaFold2 is able to predict the presence of residues in disordered regions maintaining interactions with different ligands.•Residues…”
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