Search Results - "MORITZ, Robert L"

The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition by Deutsch, Eric W, Csordas, Attila, Sun, Zhi, Jarnuczak, Andrew, Perez-Riverol, Yasset, Ternent, Tobias, Campbell, David S, Bernal-Llinares, Manuel, Okuda, Shujiro, Kawano, Shin, Moritz, Robert L, Carver, Jeremy J, Wang, Mingxun, Ishihama, Yasushi, Bandeira, Nuno, Hermjakob, Henning, Vizcaíno, Juan Antonio

“…The ProteomeXchange (PX) Consortium of proteomics resources (http://www.proteomexchange.org) was formally started in 2011 to standardize data submission and…”
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Multi-laboratory assessment of reproducibility, qualitative and quantitative performance of SWATH-mass spectrometry by Collins, Ben C., Hunter, Christie L., Liu, Yansheng, Schilling, Birgit, Rosenberger, George, Bader, Samuel L., Chan, Daniel W., Gibson, Bradford W., Gingras, Anne-Claude, Held, Jason M., Hirayama-Kurogi, Mio, Hou, Guixue, Krisp, Christoph, Larsen, Brett, Lin, Liang, Liu, Siqi, Molloy, Mark P., Moritz, Robert L., Ohtsuki, Sumio, Schlapbach, Ralph, Selevsek, Nathalie, Thomas, Stefani N., Tzeng, Shin-Cheng, Zhang, Hui, Aebersold, Ruedi

“…Quantitative proteomics employing mass spectrometry is an indispensable tool in life science research. Targeted proteomics has emerged as a powerful approach…”
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Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics by Deutsch, Eric W., Mendoza, Luis, Shteynberg, David, Slagel, Joseph, Sun, Zhi, Moritz, Robert L.

“…Democratization of genomics technologies has enabled the rapid determination of genotypes. More recently the democratization of comprehensive proteomics…”
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iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates by Shteynberg, David, Deutsch, Eric W., Lam, Henry, Eng, Jimmy K., Sun, Zhi, Tasman, Natalie, Mendoza, Luis, Moritz, Robert L., Aebersold, Ruedi, Nesvizhskii, Alexey I.

“…The combination of tandem mass spectrometry and sequence database searching is the method of choice for the identification of peptides and the mapping of…”
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Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome by Kusebauch, Ulrike, Campbell, David S., Deutsch, Eric W., Chu, Caroline S., Spicer, Douglas A., Brusniak, Mi-Youn, Slagel, Joseph, Sun, Zhi, Stevens, Jeffrey, Grimes, Barbara, Shteynberg, David, Hoopmann, Michael R., Blattmann, Peter, Ratushny, Alexander V., Rinner, Oliver, Picotti, Paola, Carapito, Christine, Huang, Chung-Ying, Kapousouz, Meghan, Lam, Henry, Tran, Tommy, Demir, Emek, Aitchison, John D., Sander, Chris, Hood, Leroy, Aebersold, Ruedi, Moritz, Robert L.

“…The ability to reliably and reproducibly measure any protein of the human proteome in any tissue or cell type would be transformative for understanding…”
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The Human Plasma Proteome Draft of 2017: Building on the Human Plasma PeptideAtlas from Mass Spectrometry and Complementary Assays by Schwenk, Jochen M, Omenn, Gilbert S, Sun, Zhi, Campbell, David S, Baker, Mark S, Overall, Christopher M, Aebersold, Ruedi, Moritz, Robert L, Deutsch, Eric W

“…Human blood plasma provides a highly accessible window to the proteome of any individual in health and disease. Since its inception in 2002, the Human Proteome…”
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Interrogating the Plasmodium Sporozoite Surface: Identification of Surface-Exposed Proteins and Demonstration of Glycosylation on CSP and TRAP by Mass Spectrometry-Based Proteomics by Swearingen, Kristian E, Lindner, Scott E, Shi, Lirong, Shears, Melanie J, Harupa, Anke, Hopp, Christine S, Vaughan, Ashley M, Springer, Timothy A, Moritz, Robert L, Kappe, Stefan H I, Sinnis, Photini

“…Malaria parasite infection is initiated by the mosquito-transmitted sporozoite stage, a highly motile invasive cell that targets hepatocytes in the liver for…”
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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0 by Deutsch, Eric W, Lane, Lydie, Overall, Christopher M, Bandeira, Nuno, Baker, Mark S, Pineau, Charles, Moritz, Robert L, Corrales, Fernando, Orchard, Sandra, Van Eyk, Jennifer E, Paik, Young-Ki, Weintraub, Susan T, Vandenbrouck, Yves, Omenn, Gilbert S

“…The Human Proteome Organization’s (HUPO) Human Proteome Project (HPP) developed Mass Spectrometry (MS) Data Interpretation Guidelines that have been applied…”
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Building ProteomeTools based on a complete synthetic human proteome by Zolg, Daniel P, Wilhelm, Mathias, Schnatbaum, Karsten, Zerweck, Johannes, Knaute, Tobias, Delanghe, Bernard, Bailey, Derek J, Gessulat, Siegfried, Ehrlich, Hans-Christian, Weininger, Maximilian, Yu, Peng, Schlegl, Judith, Kramer, Karl, Schmidt, Tobias, Kusebauch, Ulrike, Deutsch, Eric W, Aebersold, Ruedi, Moritz, Robert L, Wenschuh, Holger, Moehring, Thomas, Aiche, Stephan, Huhmer, Andreas, Reimer, Ulf, Kuster, Bernhard

“…The ProteomeTools project provides the proteomics community with a physical synthetic tryptic peptide resource and a digital LC-MS/MS data resource covering…”
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Kojak: Efficient Analysis of Chemically Cross-Linked Protein Complexes by Hoopmann, Michael R, Zelter, Alex, Johnson, Richard S, Riffle, Michael, MacCoss, Michael J, Davis, Trisha N, Moritz, Robert L

“…Protein chemical cross-linking and mass spectrometry enable the analysis of protein–protein interactions and protein topologies; however, complicated…”
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Proteomics Analysis of A33 Immunoaffinity-purified Exosomes Released from the Human Colon Tumor Cell Line LIM1215 Reveals a Tissue-specific Protein Signature by Mathivanan, Suresh, Lim, Justin W.E., Tauro, Bow J., Ji, Hong, Moritz, Robert L., Simpson, Richard J.

“…Exosomes are 40–100-nm-diameter nanovesicles of endocytic origin that are released from diverse cell types. To better understand the biological role of…”
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PTMProphet: Fast and Accurate Mass Modification Localization for the Trans-Proteomic Pipeline by Shteynberg, David D, Deutsch, Eric W, Campbell, David S, Hoopmann, Michael R, Kusebauch, Ulrike, Lee, Dave, Mendoza, Luis, Midha, Mukul K, Sun, Zhi, Whetton, Anthony D, Moritz, Robert L

“…Spectral matching sequence database search engines commonly used on mass spectrometry-based proteomics experiments excel at identifying peptide sequence ions,…”
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The Mtb Proteome Library: A Resource of Assays to Quantify the Complete Proteome of Mycobacterium tuberculosis by Schubert, Olga T., Mouritsen, Jeppe, Ludwig, Christina, Röst, Hannes L., Rosenberger, George, Arthur, Patrick K., Claassen, Manfred, Campbell, David S., Sun, Zhi, Farrah, Terry, Gengenbacher, Martin, Maiolica, Alessio, Kaufmann, Stefan H.E., Moritz, Robert L., Aebersold, Ruedi

“…Research advancing our understanding of Mycobacterium tuberculosis (Mtb) biology and complex host-Mtb interactions requires consistent and precise quantitative…”
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Transcriptomics and proteomics reveal two waves of translational repression during the maturation of malaria parasite sporozoites by Lindner, Scott E., Swearingen, Kristian E., Shears, Melanie J., Walker, Michael P., Vrana, Erin N., Hart, Kevin J., Minns, Allen M., Sinnis, Photini, Moritz, Robert L., Kappe, Stefan H. I.

“…Plasmodium sporozoites are transmitted from infected mosquitoes to mammals, and must navigate the host skin and vasculature to infect the liver. This journey…”
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A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis by Picotti, Paola, Clément-Ziza, Mathieu, Lam, Henry, Campbell, David S., Schmidt, Alexander, Deutsch, Eric W., Röst, Hannes, Sun, Zhi, Rinner, Oliver, Reiter, Lukas, Shen, Qin, Michaelson, Jacob J., Frei, Andreas, Alberti, Simon, Kusebauch, Ulrike, Wollscheid, Bernd, Moritz, Robert L., Beyer, Andreas, Aebersold, Ruedi

“…High-throughput peptide synthesis and mass spectrometry are used to generate a near-complete reference map of the Saccharomyces cerevisiae proteome; two…”
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Total and Putative Surface Proteomics of Malaria Parasite Salivary Gland Sporozoites by Lindner, Scott E., Swearingen, Kristian E., Harupa, Anke, Vaughan, Ashley M., Sinnis, Photini, Moritz, Robert L., Kappe, Stefan H.I.

“…Malaria infections of mammals are initiated by the transmission of Plasmodium salivary gland sporozoites during an Anopheles mosquito vector bite. Sporozoites…”
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DIALib-QC an assessment tool for spectral libraries in data-independent acquisition proteomics by Midha, Mukul K., Campbell, David S., Kapil, Charu, Kusebauch, Ulrike, Hoopmann, Michael R., Bader, Samuel L., Moritz, Robert L.

“…Data-independent acquisition (DIA) mass spectrometry, also known as Sequential Window Acquisition of all Theoretical Mass Spectra (SWATH), is a popular…”
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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1 by Deutsch, Eric W, Overall, Christopher M, Van Eyk, Jennifer E, Baker, Mark S, Paik, Young-Ki, Weintraub, Susan T, Lane, Lydie, Martens, Lennart, Vandenbrouck, Yves, Kusebauch, Ulrike, Hancock, William S, Hermjakob, Henning, Aebersold, Ruedi, Moritz, Robert L, Omenn, Gilbert S

“…Every data-rich community research effort requires a clear plan for ensuring the quality of the data interpretation and comparability of analyses. To address…”
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Lumenal calcification and microvasculopathy in fetuin-A-deficient mice lead to multiple organ morbidity by Herrmann, Marietta, Babler, Anne, Moshkova, Irina, Gremse, Felix, Kiessling, Fabian, Kusebauch, Ulrike, Nelea, Valentin, Kramann, Rafael, Moritz, Robert L, McKee, Marc D, Jahnen-Dechent, Willi

“…The plasma protein fetuin-A mediates the formation of protein-mineral colloids known as calciprotein particles (CPP)-rapid clearance of these CPP by the…”
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Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics by Hüttenhain, Ruth, Soste, Martin, Selevsek, Nathalie, Röst, Hannes, Sethi, Atul, Carapito, Christine, Farrah, Terry, Deutsch, Eric W, Kusebauch, Ulrike, Moritz, Robert L, Niméus-Malmström, Emma, Rinner, Oliver, Aebersold, Ruedi

“…The rigorous testing of hypotheses on suitable sample cohorts is a major limitation in translational research. This is particularly the case for the validation…”
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