Search Results - "MORI, Hirotada"

Extensive impact of non-antibiotic drugs on human gut bacteria by Maier, Lisa, Pruteanu, Mihaela, Kuhn, Michael, Zeller, Georg, Telzerow, Anja, Anderson, Exene Erin, Brochado, Ana Rita, Fernandez, Keith Conrad, Dose, Hitomi, Mori, Hirotada, Patil, Kiran Raosaheb, Bork, Peer, Typas, Athanasios

“…A few commonly used non-antibiotic drugs have recently been associated with changes in gut microbiome composition, but the extent of this phenomenon is…”
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Bacterial persisters are a stochastically formed subpopulation of low-energy cells by Manuse, Sylvie, Shan, Yue, Canas-Duarte, Silvia J, Bakshi, Somenath, Sun, Wei-Sheng, Mori, Hirotada, Paulsson, Johan, Lewis, Kim

“…Persisters represent a small subpopulation of non- or slow-growing bacterial cells that are tolerant to killing by antibiotics. Despite their prominent role in…”
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Genetically stable kill-switch using "demon and angel" expression construct of essential genes by Kato, Yusuke, Mori, Hirotada

“…Genetic instability of synthetic genetic devices is a key obstacle for practical use. This problem is particularly critical in kill-switches for conditional…”
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Glycerol-derived reuterin regulates human intestinal microbiota and metabolites by Yang, Xi, Liu, Wei, Zhang, Xiaoling, Sun, Minhua, Yi, Hongbo, Liao, Shenquan, Xiang, Rong, Zhang, Hao, Yang, Qiao, Mori, Hirotada

“…Reuterin, a mixture of different forms of 3-hydroxypropanal (3-HPA), including HPA hydrate and HPA dimer, is an antimicrobial compound converted from glycerol…”
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In vitro membrane protein synthesis inside Sec translocon-reconstituted cell-sized liposomes by Ohta, Naoki, Kato, Yasuhiko, Watanabe, Hajime, Mori, Hirotada, Matsuura, Tomoaki

“…Protein synthesis using an in vitro transcription-translation system (IVTT) inside cell-sized liposomes has become a valuable tool to study the properties of…”
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Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing by Conway, Tyrrell, Creecy, James P, Maddox, Scott M, Grissom, Joe E, Conkle, Trevor L, Shadid, Tyler M, Teramoto, Jun, San Miguel, Phillip, Shimada, Tomohiro, Ishihama, Akira, Mori, Hirotada, Wanner, Barry L

“…We analyzed the transcriptome of Escherichia coli K-12 by strand-specific RNA sequencing at single-nucleotide resolution during steady-state…”
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Update of thermotolerant genes essential for survival at a critical high temperature in Escherichia coli by Murata, Masayuki, Ishii, Ayana, Fujimoto, Hiroko, Nishimura, Kaori, Kosaka, Tomoyuki, Mori, Hirotada, Yamada, Mamoru

“…Previous screening of a single-gene knockout library consisting of 3,908 disrupted-mutant strains allowed us to identify 51 thermotolerant genes that are…”
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Past, Present, and Future of Genome Modification in Escherichia coli by Mori, Hirotada, Kataoka, Masakazu, Yang, Xi

“…K-12 is one of the most well-studied species of bacteria. This species, however, is much more difficult to modify by homologous recombination (HR) than other…”
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Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12 by INOUE, Tetsuyoshi, SHINGAKI, Ryuji, HIROSE, Shotaro, WAKI, Kaori, MORI, Hirotada, FUKUI, Kazuhiro

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Genome-Wide Screening with Hydroxyurea Reveals a Link between Nonessential Ribosomal Proteins and Reactive Oxygen Species Production by Nakayashiki, Toru, Mori, Hirotada

“…We performed a screening of hydroxyurea (HU)-sensitive mutants using a single-gene-deletion mutant collection in Escherichia coli. HU inhibits ribonucleotide…”
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Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling by Nakahigashi, Kenji, Takai, Yuki, Kimura, Michiko, Abe, Nozomi, Nakayashiki, Toru, Shiwa, Yuh, Yoshikawa, Hirofumi, Wanner, Barry L, Ishihama, Yasushi, Mori, Hirotada

“…Tetracycline-inhibited ribosome profiling (TetRP) provides a powerful new experimental tool for comprehensive genome-wide identification of translation…”
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Optimization of RK2-based gene introduction system for Bacillus subtilis by Yokoi, Takahiro, Itaya, Mitsuhiro, Mori, Hirotada, Kataoka, Masakazu

“…The Gram-positive bacterium Bacillus subtilis plays important roles in both industrial applications and basic research. However, transformation of competent B…”
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Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism by Tomita, Masaru, Soga, Tomoyoshi, Honma, Masayuki, Nakahigashi, Kenji, Toya, Yoshihiro, Hasegawa, Miki, Watanabe, Hisami, Mori, Hirotada, Takai, Yuki, Ishii, Nobuyoshi

“…Central carbon metabolism is a basic and exhaustively analyzed pathway. However, the intrinsic robustness of the pathway might still conceal uncharacterized…”
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Effect of codon adaptation on codon-level and gene-level translation efficiency in vivo by Nakahigashi, Kenji, Takai, Yuki, Shiwa, Yuh, Wada, Mei, Honma, Masayuki, Yoshikawa, Hirofumi, Tomita, Masaru, Kanai, Akio, Mori, Hirotada

“…There is a significant difference between synonymous codon usage in many organisms, and it is known that codons used more frequently generally showed efficient…”
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Update on the Keio collection of Escherichia coli single-gene deletion mutants by Yamamoto, Natsuko, Nakahigashi, Kenji, Nakamichi, Tomoko, Yoshino, Mihoko, Takai, Yuki, Touda, Yae, Furubayashi, Akemi, Kinjyo, Satoko, Dose, Hitomi, Hasegawa, Miki, Datsenko, Kirill A, Nakayashiki, Toru, Tomita, Masaru, Wanner, Barry L, Mori, Hirotada

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Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function by Yumura, Mio, Yamamoto, Natsuko, Yokoyama, Katsushi, Mori, Hirotada, Yomo, Tetsuya, Ichihashi, Norikazu

“…Construction of a complex artificial self-replication system is challenging in the field of in vitro synthetic biology. Recently, we developed a…”
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Two‐component system VraSR positively modulates the regulation of cell‐wall biosynthesis pathway in Staphylococcus aureus by Kuroda, Makoto, Kuroda, Hiroko, Oshima, Taku, Takeuchi, Fumihiko, Mori, Hirotada, Hiramatsu, Keiichi

“…Summary DNA microarray covering the whole genome of Staphylococcus aureus strain N315 was prepared to investigate transcription profiles. The microarray…”
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Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite by Morales, Eduardo H., Pinto, Camilo A., Luraschi, Roberto, Muñoz-Villagrán, Claudia M., Cornejo, Fabián A., Simpkins, Scott W., Nelson, Justin, Arenas, Felipe A., Piotrowski, Jeff S., Myers, Chad L., Mori, Hirotada, Vásquez, Claudio C.

“…The metalloid tellurite is highly toxic to microorganisms. Several mechanisms of action have been proposed, including thiol depletion and generation of…”
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Evolved bacterial resistance against fluoropyrimidines can lower chemotherapy impact in the Caenorhabditis elegans host by Rosener, Brittany, Sayin, Serkan, Oluoch, Peter O, García González, Aurian P, Mori, Hirotada, Walhout, Albertha Jm, Mitchell, Amir

“…Metabolism of host-targeted drugs by the microbiome can substantially impact host treatment success. However, since many host-targeted drugs inadvertently…”
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Genetic mutation in Escherichia coli genome during adaptation to the murine intestine is optimized for the host diet by Tsukimi, Tomoya, Obana, Nozomu, Shigemori, Suguru, Arakawa, Kazuharu, Miyauchi, Eiji, Yang, Jiayue, Song, Isaiah, Ashino, Yujin, Wakayama, Masataka, Soga, Tomoyoshi, Tomita, Masaru, Ohno, Hiroshi, Mori, Hirotada, Fukuda, Shinji

“…The gut microbiota is closely associated with human health and is greatly impacted by the host diet. Bacteria such as live in the gut all throughout the life…”
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