Search Results - "MICHEL, Julien"

Scaling Up SLIC Superpixels Using a Tile-Based Approach by Derksen, Dawa, Inglada, Jordi, Michel, Julien

“…Image segmentation techniques are challenging to apply to large-size remote sensing imagery. Indeed, if the data to be processed are larger than the computer's…”
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Investigating Cryptic Binding Sites by Molecular Dynamics Simulations by Kuzmanic, Antonija, Bowman, Gregory R, Juarez-Jimenez, Jordi, Michel, Julien, Gervasio, Francesco L

“…Conspectus This Account highlights recent advances and discusses major challenges in investigations of cryptic (hidden) binding sites by molecular simulations…”
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Global distribution of modern shallow-water marine carbonate factories: a spatial model based on environmental parameters by Laugié, Marie, Michel, Julien, Pohl, Alexandre, Poli, Emmanuelle, Borgomano, Jean

“…Prediction of carbonate distributions at a global scale through geological time represents a challenging scientific issue, which is critical for carbonate…”
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Blinded predictions of standard binding free energies: lessons learned from the SAMPL6 challenge by Papadourakis, Michail, Bosisio, Stefano, Michel, Julien

“…In the context of the SAMPL6 challenges, series of blinded predictions of standard binding free energies were made with the SOMD software for a dataset of 27…”
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FESetup: Automating Setup for Alchemical Free Energy Simulations by Loeffler, Hannes H, Michel, Julien, Woods, Christopher

“…FESetup is a new pipeline tool which can be used flexibly within larger workflows. The tool aims to support fast and easy setup of alchemical free energy…”
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The impact of small molecule binding on the energy landscape of the intrinsically disordered protein C-myc by Michel, Julien, Cuchillo, Rémi

“…Intrinsically disordered proteins are attractive therapeutic targets owing to their prevalence in several diseases. Yet their lack of well-defined structure…”
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Assessment of Binding Affinity via Alchemical Free-Energy Calculations by Kuhn, Maximilian, Firth-Clark, Stuart, Tosco, Paolo, Mey, Antonia S J S, Mackey, Mark, Michel, Julien

“…Free-energy calculations have seen increased usage in structure-based drug design. Despite the rising interest, automation of the complex calculations and…”
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End-to-end Learning For Land Cover Classification Using Irregular And Unaligned SITS By Combining Attention-Based Interpolation With Sparse Variational Gaussian Processes by Bellet, Valentine, Fauvel, Mathieu, Inglada, Jordi, Michel, Julien

“…In this article, we propose a method exploiting irregular and unaligned Sentinel-2 satellite image time series (SITS) for large-scale land cover pixel-based…”
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Assessment of the Usefulness of Spectral Bands for the Next Generation of Sentinel-2 Satellites by Reconstruction of Missing Bands by Inglada, Jordi, Michel, Julien, Hagolle, Olivier

“…The Sentinel-2 constellation has been providing high spatial, spectral and temporal resolution optical imagery of the continental surfaces since 2015. The…”
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Assessment of Optimal Transport for Operational Land-Cover Mapping Using High-Resolution Satellite Images Time Series without Reference Data of the Mapping Period by Tardy, Benjamin, Inglada, Jordi, Michel, Julien

“…Land-cover map production using remote-sensing imagery is governed by data availability. In our case, data sources are two-fold: on one hand, optical data…”
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Prediction of protein–ligand binding affinity by free energy simulations: assumptions, pitfalls and expectations by Michel, Julien, Essex, Jonathan W.

“…Many limitations of current computer-aided drug design arise from the difficulty of reliably predicting the binding affinity of a small molecule to a…”
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Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity by Huggins, David J., Biggin, Philip C., Dämgen, Marc A., Essex, Jonathan W., Harris, Sarah A., Henchman, Richard H., Khalid, Syma, Kuzmanic, Antonija, Laughton, Charles A., Michel, Julien, Mulholland, Adrian J., Rosta, Edina, Sansom, Mark S. P., van der Kamp, Marc W.

“…Biomolecular simulation is increasingly central to understanding and designing biological molecules and their interactions. Detailed, physics‐based simulation…”
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Energetics of Displacing Water Molecules from Protein Binding Sites: Consequences for Ligand Optimization by Michel, Julien, Tirado-Rives, Julian, Jorgensen, William L

“…A strategy in drug design is to consider enhancing the affinity of lead molecules with structural modifications that displace water molecules from a protein…”
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A fluorogenic probe for granzyme B enables in-biopsy evaluation and screening of response to anticancer immunotherapies by Scott, Jamie I., Mendive-Tapia, Lorena, Gordon, Doireann, Barth, Nicole D., Thompson, Emily J., Cheng, Zhiming, Taggart, David, Kitamura, Takanori, Bravo-Blas, Alberto, Roberts, Edward W., Juarez-Jimenez, Jordi, Michel, Julien, Piet, Berber, de Vries, I. Jolanda, Verdoes, Martijn, Dawson, John, Carragher, Neil O., Connor, Richard A. O’, Akram, Ahsan R., Frame, Margaret, Serrels, Alan, Vendrell, Marc

“…Immunotherapy promotes the attack of cancer cells by the immune system; however, it is difficult to detect early responses before changes in tumor size occur…”
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Prediction of the Water Content in Protein Binding Sites by Michel, Julien, Tirado-Rives, Julian, Jorgensen, William L

“…An efficient molecular simulation methodology has been developed to determine the positioning of water molecules in the binding site of a protein or…”
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Marine carbonate factories: a global model of carbonate platform distribution by Michel, Julien, Laugié, Marie, Pohl, Alexandre, Lanteaume, Cyprien, Masse, Jean-Pierre, Donnadieu, Yannick, Borgomano, Jean

“…Platform carbonates are a major component of the Earth system, but their spatial distribution through geological times is difficult to reconstruct, due to the…”
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A Metric for Evaluating the Geometric Quality of Land Cover Maps Generated with Contextual Features from High-Dimensional Satellite Image Time Series without Dense Reference Data by Derksen, Dawa, Inglada, Jordi, Michel, Julien

“…Land cover maps are a key resource for many studies in Earth Observation, and thanks to the high temporal, spatial, and spectral resolutions of systems like…”
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Compensation Method for Parallel and Iterative Real-Time Simulation of Electromagnetic Transients by Bruned, B., Mahseredjian, J., Dennetiere, S., Michel, J., Schudel, M., Bracikowski, N.

“…Parallelization allows accelerating the computation of Electromagnetic Transients (EMTs). It can rely on the natural propagation delay of transmission lines…”
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Energetics of a protein disorder-order transition in small molecule recognition by Mendoza-Martinez, Cesar, Papadourakis, Michail, Llabrés, Salomé, Gupta, Arun A, Barlow, Paul N, Michel, Julien

“…Many proteins recognise other proteins via mechanisms that involve the folding of intrinsically disordered regions upon complex formation. Here we investigate…”
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The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations by Rizzi, Andrea, Jensen, Travis, Slochower, David R., Aldeghi, Matteo, Gapsys, Vytautas, Ntekoumes, Dimitris, Bosisio, Stefano, Papadourakis, Michail, Henriksen, Niel M., de Groot, Bert L., Cournia, Zoe, Dickson, Alex, Michel, Julien, Gilson, Michael K., Shirts, Michael R., Mobley, David L., Chodera, John D.

“…Approaches for computing small molecule binding free energies based on molecular simulations are now regularly being employed by academic and industry…”
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