Search Results - "MALIEPAARD, Chris"

The simulation of meiosis in diploid and tetraploid organisms using various genetic models by Voorrips, Roeland E, Maliepaard, Chris A

“…While the genetics of diploid inheritance are well studied and software for linkage mapping, haplotyping and QTL analysis are available, for tetraploids the…”
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FitTetra 2.0 - improved genotype calling for tetraploids with multiple population and parental data support by Zych, Konrad, Gort, Gerrit, Maliepaard, Chris A, Jansen, Ritsert C, Voorrips, Roeland E

“…Genetic studies in tetraploids are lagging behind in comparison with studies of diploids as the complex genetics of tetraploids require much more elaborated…”
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Tools for Genetic Studies in Experimental Populations of Polyploids by Bourke, Peter M, Voorrips, Roeland E, Visser, Richard G F, Maliepaard, Chris

“…Polyploid organisms carry more than two copies of each chromosome, a condition rarely tolerated in animals but which occurs relatively frequently in the plant…”
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Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis by Karlova, Rumyana, van Haarst, Jan C, Maliepaard, Chris, van de Geest, Henri, Bovy, Arnaud G, Lammers, Michiel, Angenent, Gerco C, de Maagd, Ruud A

“…MicroRNAs (miRNAs) play important roles in plant development through regulation of gene expression by mRNA degradation or translational inhibition. Despite the…”
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Finished genome of the fungal wheat pathogen Mycosphaerella graminicola reveals dispensome structure, chromosome plasticity, and stealth pathogenesis by Goodwin, Stephen B, M'barek, Sarrah Ben, Dhillon, Braham, Wittenberg, Alexander H J, Crane, Charles F, Hane, James K, Foster, Andrew J, Van der Lee, Theo A J, Grimwood, Jane, Aerts, Andrea, Antoniw, John, Bailey, Andy, Bluhm, Burt, Bowler, Judith, Bristow, Jim, van der Burgt, Ate, Canto-Canché, Blondy, Churchill, Alice C L, Conde-Ferràez, Laura, Cools, Hans J, Coutinho, Pedro M, Csukai, Michael, Dehal, Paramvir, De Wit, Pierre, Donzelli, Bruno, van de Geest, Henri C, van Ham, Roeland C H J, Hammond-Kosack, Kim E, Henrissat, Bernard, Kilian, Andrzej, Kobayashi, Adilson K, Koopmann, Edda, Kourmpetis, Yiannis, Kuzniar, Arnold, Lindquist, Erika, Lombard, Vincent, Maliepaard, Chris, Martins, Natalia, Mehrabi, Rahim, Nap, Jan P H, Ponomarenko, Alisa, Rudd, Jason J, Salamov, Asaf, Schmutz, Jeremy, Schouten, Henk J, Shapiro, Harris, Stergiopoulos, Ioannis, Torriani, Stefano F F, Tu, Hank, de Vries, Ronald P, Waalwijk, Cees, Ware, Sarah B, Wiebenga, Ad, Zwiers, Lute-Harm, Oliver, Richard P, Grigoriev, Igor V, Kema, Gert H J

“…The plant-pathogenic fungus Mycosphaerella graminicola (asexual stage: Septoria tritici) causes septoria tritici blotch, a disease that greatly reduces the…”
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Multi-environment QTL analysis of plant and flower morphological traits in tetraploid rose by Bourke, Peter M., Gitonga, Virginia W., Voorrips, Roeland E., Visser, Richard G. F., Krens, Frans A., Maliepaard, Chris

“…Key message Rose morphological traits such as prickles or petal number are influenced by a few key QTL which were detected across different growing…”
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GWAS in tetraploid potato: identification and validation of SNP markers associated with glycoalkaloid content by Vos, Peter G., Paulo, M. João, Bourke, Peter M., Maliepaard, Chris A., van Eeuwijk, Fred A., Visser, Richard G. F., van Eck, Herman J.

“…Genome-wide association studies (GWAS) are a useful tool to unravel the genetic architecture of complex traits, but the results can be difficult to interpret…”
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Multiallelic models for QTL mapping in diverse polyploid populations by Thérèse Navarro, Alejandro, Tumino, Giorgio, Voorrips, Roeland E, Arens, Paul, Smulders, Marinus J M, van de Weg, Eric, Maliepaard, Chris

“…Quantitative trait locus (QTL) analysis allows to identify regions responsible for a trait and to associate alleles with their effect on phenotypes. When using…”
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Understanding the Effectiveness of Genomic Prediction in Tetraploid Potato by Wilson, Stefan, Zheng, Chaozhi, Maliepaard, Chris, Mulder, Han A, Visser, Richard G F, van der Burgt, Ate, van Eeuwijk, Fred

“…Use of genomic prediction (GP) in tetraploid is becoming more common. Therefore, we think it is the right time for a comparison of GP models for tetraploid…”
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Composition of human skin microbiota affects attractiveness to malaria mosquitoes by Verhulst, Niels O, Qiu, Yu Tong, Beijleveld, Hans, Maliepaard, Chris, Knights, Dan, Schulz, Stefan, Berg-Lyons, Donna, Lauber, Christian L, Verduijn, Willem, Haasnoot, Geert W, Mumm, Roland, Bouwmeester, Harro J, Claas, Frans H J, Dicke, Marcel, van Loon, Joop J A, Takken, Willem, Knight, Rob, Smallegange, Renate C

“…The African malaria mosquito Anopheles gambiae sensu stricto continues to play an important role in malaria transmission, which is aggravated by its high…”
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Genome-wide association analysis in tetraploid potato reveals four QTLs for protein content by Klaassen, Michiel T., Willemsen, Johan H., Vos, Peter G., Visser, Richard G. F., van Eck, Herman J., Maliepaard, Chris, Trindade, Luisa M.

“…Valorisation of tuber protein is relevant for the potato starch industry to create added-value and reduce impact on the environment. Hence, protein content has…”
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Partial preferential chromosome pairing is genotype dependent in tetraploid rose by Bourke, Peter M., Arens, Paul, Voorrips, Roeland E., Esselink, G. Danny, Koning‐Boucoiran, Carole F. S., van't Westende, Wendy P. C., Santos Leonardo, Tiago, Wissink, Patrick, Zheng, Chaozhi, Geest, Geert, Visser, Richard G. F., Krens, Frans. A., Smulders, Marinus J. M., Maliepaard, Chris

“…Summary It has long been recognised that polyploid species do not always neatly fall into the categories of auto‐ or allopolyploid, leading to the term…”
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Family-Based Haplotype Estimation and Allele Dosage Correction for Polyploids Using Short Sequence Reads by Motazedi, Ehsan, Maliepaard, Chris, Finkers, Richard, Visser, Richard, de Ridder, Dick

“…DNA sequence reads contain information about the genomic variants located on a single chromosome. By extracting and extending this information using the…”
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Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels by van der Weijde, Tim, Kamei, Claire L Alvim, Severing, Edouard I, Torres, Andres F, Gomez, Leonardo D, Dolstra, Oene, Maliepaard, Chris A, McQueen-Mason, Simon J, Visser, Richard G F, Trindade, Luisa M

“…Miscanthus sinensis is a high yielding perennial grass species with great potential as a bioenergy feedstock. One of the challenges that currently impedes…”
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Using probabilistic genotypes in linkage analysis of polyploids by Liao, Yanlin, Voorrips, Roeland E., Bourke, Peter M., Tumino, Giorgio, Arens, Paul, Visser, Richard G. F., Smulders, Marinus J. M., Maliepaard, Chris

“…Key message In polyploids, linkage mapping is carried out using genotyping with discrete dosage scores. Here, we use probabilistic genotypes and we validate it…”
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Smooth Descent: A ploidy-aware algorithm to improve linkage mapping in the presence of genotyping errors by Thérèse Navarro, Alejandro, Bourke, Peter M, van de Weg, Eric, Clot, Corentin R, Arens, Paul, Finkers, Richard, Maliepaard, Chris

“…Linkage mapping is an approach to order markers based on recombination events. Mapping algorithms cannot easily handle genotyping errors, which are common in…”
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Genetical genomics of quality related traits in potato tubers using proteomics by Acharjee, Animesh, Chibon, Pierre-Yves, Kloosterman, Bjorn, America, Twan, Renaut, Jenny, Maliepaard, Chris, Visser, Richard G F

“…Recent advances in ~omics technologies such as transcriptomics, metabolomics and proteomics along with genotypic profiling have permitted the genetic…”
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Training Set Construction for Genomic Prediction in Auto-Tetraploids: An Example in Potato by Wilson, Stefan, Malosetti, Marcos, Maliepaard, Chris, Mulder, Han A, Visser, Richard G F, van Eeuwijk, Fred

“…Training set construction is an important prerequisite to Genomic Prediction (GP), and while this has been studied in diploids, polyploids have not received…”
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Quantifying the Power and Precision of QTL Analysis in Autopolyploids Under Bivalent and Multivalent Genetic Models by Bourke, Peter M, Hackett, Christine A, Voorrips, Roeland E, Visser, Richard G F, Maliepaard, Chris

“…New genotyping technologies, offering the possibility of high genetic resolution at low cost, have helped fuel a surge in interest in the genetic analysis of…”
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patterns of population differentiation in a Brassica rapa core collection by Pino Del Carpio, Dunia, Basnet, Ram Kumar, De Vos, Ric C. H, Maliepaard, Chris, Visser, Richard, Bonnema, Guusje

“…With the recent advances in high throughput profiling techniques the amount of genetic and phenotypic data available has increased dramatically. Although many…”
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