Search Results - "MACLEAN, Daniel"

Spatio-Temporal Cellular Dynamics of the Arabidopsis Flagellin Receptor Reveal Activation Status-Dependent Endosomal Sorting by Beck, Martina, Zhou, Ji, Faulkner, Christine, MacLean, Daniel, Robatzek, Silke

“…The activity of surface receptors is location specific, dependent upon the dynamic membrane trafficking network and receptor-mediated endocytosis (RME)…”
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Control of Plant Organ Size by KLUH/ CYP78A5-Dependent Intercellular Signaling by Anastasiou, Elena, Kenz, Sabine, Gerstung, Moritz, MacLean, Daniel, Timmer, Jens, Fleck, Christian, Lenhard, Michael

“…Plant organs grow to characteristic sizes that are genetically controlled. In animals, signaling by mobile growth factors is thought to be an effective…”
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Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains by Bücherl, Christoph A, Jarsch, Iris K, Schudoma, Christian, Segonzac, Cécile, Mbengue, Malick, Robatzek, Silke, MacLean, Daniel, Ott, Thomas, Zipfel, Cyril

“…Cell surface receptors govern a multitude of signalling pathways in multicellular organisms. In plants, prominent examples are the receptor kinases FLS2 and…”
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Application of 'next-generation' sequencing technologies to microbial genetics by Studholme, David J, MacLean, Daniel, Jones, Jonathan D. G

“…Key Points New sequencing technologies, such as Solexa, 454 pyrosequencing and SOLiD, developed by Illumina, Roche and Applied Biosystems, respectively, are…”
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PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update by Durek, Pawel, Schmidt, Robert, Heazlewood, Joshua L, Jones, Alexandra, MacLean, Daniel, Nagel, Axel, Kersten, Birgit, Schulze, Waltraud X

“…The PhosPhAt database of Arabidopsis phosphorylation sites was initially launched in August 2007. Since then, along with 10-fold increase in database entries,…”
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Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage by Raffaele, Sylvain, Farrer, Rhys A, Cano, Liliana M, Studholme, David J, MacLean, Daniel, Thines, Marco, Jiang, Rays H.Y, Zody, Michael C, Kunjeti, Sridhara G, Donofrio, Nicole M, Meyers, Blake C, Nusbaum, Chad, Kamoun, Sophien

“…Many plant pathogens, including those in the lineage of the Irish potato famine organism Phytophthora infestans, evolve by host jumps followed by…”
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Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data by Kosugi, Shunichi, Natsume, Satoshi, Yoshida, Kentaro, MacLean, Daniel, Cano, Liliana, Kamoun, Sophien, Terauchi, Ryohei

“…Accurate identification of DNA polymorphisms using next-generation sequencing technology is challenging because of a high rate of sequencing error and…”
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Arabidopsis downy mildew effector HaRxL106 suppresses plant immunity by binding to RADICAL-INDUCED CELL DEATH1 by Wirthmueller, Lennart, Asai, Shuta, Rallapalli, Ghanasyam, Sklenar, Jan, Fabro, Georgina, Kim, Dae Sung, Lintermann, Ruth, Jaspers, Pinja, Wrzaczek, Michael, Kangasjärvi, Jaakko, MacLean, Daniel, Menke, Frank L. H., Banfield, Mark J., Jones, Jonathan D. G.

“…The oomycete pathogen Hyaloperonospora arabidopsidis (Hpa) causes downy mildew disease on Arabidopsis. To colonize its host, Hpa translocates effector proteins…”
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Physico-chemical characteristics of juice extracted by blender and mechanical press from pomegranate cultivars grown in Georgia by Rajasekar, Dhivyalakshmi, Akoh, Casimir C., Martino, Karina G., MacLean, Daniel D.

“…► Pomegranate juice were extracted using blender and mechanical press. ► Physicochemical properties, yield, total polyphenols, antioxidant capacity and…”
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Comparison of four quick and reliable methods of assessing body fat appropriate for clinical settings among young, middle-age, and older healthy male and female adults by Escamilla, Rafael F., Yamashiro, Kyle, Asuncion, Robert, MacLean, Daniel, Thompson, Irwin Scott, McKeough, Michael

“…[Purpose] Compare four quick (approximately 60 s), reliable methods of assessing %body-fat (%BF) among young (Y, 18–34 years), middle-age (M, 35–59 years), and…”
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Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence by Rallapalli, Ghanasyam, Corredor-Moreno, Pilar, Chalstrey, Edward, Page, Martin, MacLean, Daniel

“…Traditional Map based Cloning approaches, used for the identification of desirable alleles, are extremely labour intensive and years can elapse between the…”
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Disruption of Two Defensive Signaling Pathways by a Viral RNA Silencing Suppressor by LEWSEY, Mathew G, MURPHY, Alex M, SMITH, Alison G, CARR, John P, MACLEAN, Daniel, DALCHAU, Neil, WESTWOOD, Jack H, MACAULAY, Keith, BENNETT, Mark H, MOULIN, Michael, HANKE, David E, POWELL, Glen

“…The Cucumber mosaic virus (CMV) 2b counter-defense protein disrupts plant antiviral mechanisms mediated by RNA silencing and salicylic acid (SA). We used…”
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A draft genome sequence and functional screen reveals the repertoire of type III secreted proteins of Pseudomonas syringae pathovar tabaci 11528 by Studholme, David J, Ibanez, Selena Gimenez, MacLean, Daniel, Dangl, Jeffery L, Chang, Jeff H, Rathjen, John P

“…Pseudomonas syringae is a widespread bacterial pathogen that causes disease on a broad range of economically important plant species. Pathogenicity of P…”
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Effects of Ankle Position While Performing One- and Two-Leg Floor Bridging Exercises on Core and Lower Extremity Muscle Recruitment by Escamilla, Rafael F, Thompson, Irwin S, Carinci, Joe, MacLean, Daniel, MacLean, Lisa, Aguinaldo, Arnel L

“…Given there are no known studies which have examined multiple lower extremity muscles between different ankle positions during bridging activities, the…”
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Genome-Wide Analysis of Plastid Gene Expression in Potato Leaf Chloroplasts and Tuber Amyloplasts: Transcriptional and Posttranscriptional Control by Valkov, Vladimir T., Scotti, Nunzia, Kahlau, Sabine, Maclean, Daniel, Grillo, Stefania, Gray, John C., Bock, Ralph, Cardi, Teodoro

“…Gene expression in nongreen plastids is largely uncharacterized. To compare gene expression in potato (Solarium tuberosum) tuber amyloplasts and leaf…”
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Putative Phosphatase, LSF1, Is Required for Normal Starch Turnover in Arabidopsis Leaves by Comparot-Moss, Sylviane, Kötting, Oliver, Stettler, Michaela, Edner, Christoph, Graf, Alexander, Weise, Sean E, Streb, Sebastian, Lue, Wei-Ling, MacLean, Daniel, Mahlow, Sebastian, Ritte, Gerhard, Steup, Martin, Chen, Jychian, Zeeman, Samuel C, Smith, Alison M

“…A putative phosphatase, LSF1 (for LIKE SEX4; previously PTPKIS2), is closely related in sequence and structure to STARCH-EXCESS4 (SEX4), an enzyme necessary…”
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FAST Low-Energy Beamline Studies: Toward High-Peak 5D Brightness Beams for FAST-GREENS by Cropp, Frederick, Ruan, Jinhao, Santucci, James, MacLean, Daniel, Lumpkin, Alex H., Hall, Christopher C., Edelen, Jonathan P., Murokh, Alex, Broemmelsiek, Daniel, Musumeci, Pietro

“…The FAST beamline is the injector for the planned Gamma-Ray Electron ENhanced Source (GREENS) program, which aims to achieve the demonstration and first…”
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EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics by Rallapalli, Ghanasyam, Kemen, Eric M, Robert-Seilaniantz, Alexandre, Segonzac, Cécile, Etherington, Graham J, Sohn, Kee Hoon, MacLean, Daniel, Jones, Jonathan D G

“…Next Generation Sequencing technologies have facilitated differential gene expression analysis through RNA-seq and Tag-seq methods. RNA-seq has biases…”
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Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments by Ramirez-Gonzalez, Ricardo H, Bonnal, Raoul, Caccamo, Mario, Maclean, Daniel

“…The SAMtools utilities comprise a very useful and widely used suite of software for manipulating files and alignments in the SAM and BAM format, used in a wide…”
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Boolean Model of the Pseudomonas syringae hrp Regulon Predicts a Tightly Regulated System by MacLean, Daniel, Studholme, David J

“…The Type III secretion system (TTSS) is a protein secretion machinery used by certain gram-negative bacterial pathogens of plants and animals to deliver…”
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