Search Results - "M. de la Vega"

An open resource for accurately benchmarking small variant and reference calls by Zook, Justin M., McDaniel, Jennifer, Olson, Nathan D., Wagner, Justin, Parikh, Hemang, Heaton, Haynes, Irvine, Sean A., Trigg, Len, Truty, Rebecca, McLean, Cory Y., De La Vega, Francisco M., Xiao, Chunlin, Sherry, Stephen, Salit, Marc

“…Benchmark small variant calls are required for developing, optimizing and assessing the performance of sequencing and bioinformatics methods. Here, as part of…”
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Computational Protocol to Evaluate Side-Chain Vicinal Spin–Spin Coupling Constants and Karplus Equation in Amino Acids: Alanine Dipeptide Model by San Fabián, J, Omar, S, García de la Vega, J. M

“…A computational protocol has been applied to the alanine dipeptide model in order to study the side-chain conformation, the calculated spin–spin coupling…”
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Generative Adversarial Networks (GANs) Based Synthetic Sampling for Predictive Modeling by Barigye, Stephen J., García de la Vega, José M., Perez‐Castillo, Yunierkis

“…In the present report we evaluate the possible utility of the Generative Adversarial Networks (GANs) in mapping the chemical structural space for molecular…”
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Assessing How Correlated Molecular Orbital Calculations Can Perform versus Kohn–Sham DFT: Barrier Heights/Isomerizations by Varandas, António J. C., Martínez González, Marco, Montero‐Cabrera, Luis A., Garcia de la Vega, José M.

“…To assess the title issue, 38 hydrogen transfer barrier heights and 38 non‐hydrogen transfer barrier heights/isomerizations extracted from extensive databases…”
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Theoretical Study on the Mechanism of the Thermal Retro-Cycloaddition of Isoxazolinofullerenes by Morera-Boado, Cercis, Martínez González, Marco, Miranda-Quintana, Ramón A, Suárez, Margarita, Martínez-Álvarez, Roberto, Martín, Nazario, García de la Vega, José. M

“…The retro-cycloaddition thermal reaction of isoxazolino­[4,5:1,2][60]­fullerenes to pristine fullerene seems to be guided by the electronic nature of the…”
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Computer-aided diagnosis system for characterizing ISUP grade≥2 prostate cancers at multiparametric MRI: A cross-vendor evaluation by Transin, S., Souchon, R., Gonindard-Melodelima, C., de Rozario, R., Walker, P., Funes de la Vega, M., Loffroy, R., Cormier, L., Rouvière, O.

“…To assess the performance of a computer-aided diagnosis (CADx) system trained at characterizing International Society of Urological Pathology (ISUP) grade≥2…”
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Molecular profiling of a real-world breast cancer cohort with genetically inferred ancestries reveals actionable tumor biology differences between European ancestry and African ancestry patient populations by Miyashita, Minoru, Bell, Joshua S K, Wenric, Stephane, Karaesmen, Ezgi, Rhead, Brooke, Kase, Matthew, Kaneva, Kristiyana, De La Vega, Francisco M, Zheng, Yonglan, Yoshimatsu, Toshio F, Khramtsova, Galina, Liu, Fang, Zhao, Fangyuan, Howard, Frederick M, Nanda, Rita, Beaubier, Nike, White, Kevin P, Huo, Dezheng, Olopade, Olufunmilayo I

“…Endocrine-resistant HR+/HER2- breast cancer (BC) and triple-negative BC (TNBC) are of interest for molecularly informed treatment due to their aggressive…”
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Influence measures in beta regression models through distance between distributions by Muñoz-Pichardo, J. M., Moreno-Rebollo, J. L., Pino-Mejías, R., de la Vega, M. D. Cubiles

“…In this paper, case-deletion diagnostics in beta regression models are proposed. The diagnostics are based on the distance between the distributions of the…”
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The Challenge of ab Initio Calculations in Small Neon Clusters by Ema, Ignacio, Ramírez, Guillermo, López, Rafael, San Fabián, Jesús, García de la Vega, José M.

“…Weakly bound neon dimer, trimer and tetramers are studied at HF and CCSD(T) levels using Dunning, ANO and SIGMA‐s basis sets. Their ground‐state binding…”
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Flavored axion in the UV-complete Froggatt–Nielsen models by de la Vega, Leon M. G., Nath, Newton, Nellen, Stefan, Peinado, Eduardo

“…We propose UV-completions of Froggatt–Nielsen–Peccei–Quinn models of fermion masses and mixings with flavored axions, by incorporating heavy fields. Here, the…”
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Inexpensive and Highly Reproducible Cloud-Based Variant Calling of 2,535 Human Genomes by Shringarpure, Suyash S, Carroll, Andrew, De La Vega, Francisco M, Bustamante, Carlos D

“…Population scale sequencing of whole human genomes is becoming economically feasible; however, data management and analysis remains a formidable challenge for…”
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Understanding the Structure and Properties of Cholinium Amino Acid Based Ionic Liquids by del Olmo, Lourdes, Lage-Estebanez, Isabel, López, Rafael, García de la Vega, José M

“…The molecular structure of novel ionic liquids based on cholinium amino acids (ChAA-ILs) has been analyzed. The polarization charge density for all ion pairs…”
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Polygenic risk scores: a biased prediction? by De La Vega, Francisco M, Bustamante, Carlos D

“…A new study highlights the biases and inaccuracies of polygenic risk scores (PRS) when predicting disease risk in individuals from populations other than those…”
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intersubspecific genetic map of Lens by Duran, Y, Fratini, R, Garcia, P, Perez de la Vega, M

“…A Lens map was developed based on the segregational analysis of five kinds of molecular and morphological genetic markers in 113 F2 plants obtained from a…”
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DFT Calculations of Isotropic Hyperfine Coupling Constants of Nitrogen Aromatic Radicals: The Challenge of Nitroxide Radicals by Hermosilla, L, Vega, J. M. García de la, Sieiro, C, Calle, P

“…The performance of DFT methodology to predict with accuracy the isotropic hyperfine coupling constants (hfccs) of aromatic radicals containing 14N nucleus is…”
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Evolution of Yeast Noncoding RNAs Reveals an Alternative Mechanism for Widespread Intron Loss by Mitrovich, Quinn M, Tuch, Brian B, De La Vega, Francisco M, Guthrie, Christine, Johnson, Alexander D

“…The evolutionary forces responsible for intron loss are unresolved. Whereas research has focused on protein-coding genes, here we analyze noncoding small…”
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Delving into the aqueous coprecipitation synthesis of Fe-oxide nanoparticles with a real time AC susceptometer by Fernández-García, M. P., Teixeira, J. M., González de la Vega, M., Moreira, J. C., Araújo, J. P.

“…We herein present the potentiality of a simple and desktop AC susceptometer to explore easily and in real time the influence of different alkaline agents on…”
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Systolic Blood Pressure and the Risk of Kidney Replacement Therapy and Mortality in Patients with Chronic Kidney Disease Stages 4–5 by Chávez-Iñiguez, Jonathan S., Zaragoza, Jose J., Camacho-Guerrero, Jahir R., Villavicencio-Cerón, Vanessa, Valdez-Ortiz, Rafael, Huerta-Orozco, Ana E., Chávez-Alonso, Gael, Oliva-Martinez, Ana E., Díaz-Villavicencio, Bladimir, Calderón-García, Clementina E., González-Barajas, Jose D., Arizaga-Nápoles, Manuel, De La Vega-Méndez, Frida M., Gómez-Fregoso, Juan A., Rodríguez-García, Francisco G., Navarro-Blackaller, Guillermo, Medina-González, Ramón, Alcantar-Vallin, Luz, García-García, Guillermo

“…Abstract Introduction: In patients with chronic kidney disease stages 4 and 5 (CKD stages 4–5) without dialysis and arterial hypertension, it is unknown if the…”
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Anterior and intermediate pituitary tissues express claudin 4 in follicle stellate cells and claudins 2 and 5 in endothelial cells by García-Godínez, Alejandro, Contreras, Rubén Gerardo, González-del-Pliego, Margarita, Aguirre-Benítez, Elsa, Acuña-Macías, Isabel, de la Vega, M. Teresa, Martín-Tapia, Dolores, Solano-Agama, Carmen, Mendoza-Garrido, M. Eugenia

“…Follicle-stellate cells are pituitary non-granular cells that are arranged between secretory cells or organized in follicles with small lumens. Cells from the…”
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A mathematical model applied for assisting the estimation of PMI in a case of forensic importance. First record of Conicera similis (Diptera: Phoridae) in a corpse by García-Rojo, A.M, Martínez-Sánchez, A, López, R, García de la Vega, J.M, Rica, M, González, M, Disney, R.H.L

“…Abstract We present a forensic case associated with skeletonized human remains found inside a cistern in a coastal town located in the eastern Iberian…”
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