Search Results - "Lyu, Yafei"

Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis by Li, Xiangjie, Wang, Kui, Lyu, Yafei, Pan, Huize, Zhang, Jingxiao, Stambolian, Dwight, Susztak, Katalin, Reilly, Muredach P., Hu, Gang, Li, Mingyao

“…Single-cell RNA sequencing (scRNA-seq) can characterize cell types and states through unsupervised clustering, but the ever increasing number of cells and…”
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Positive Shift of the Image of China in Recent Hollywood Blockbusters by Lyu, Yafei

“…Hollywood will encounter some cultural policies when its films are imported to the Chinese film market on a revenue-sharing basis. These include a quota…”
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Iterative transfer learning with neural network for clustering and cell type classification in single-cell RNA-seq analysis by Hu, Jian, Li, Xiangjie, Hu, Gang, Lyu, Yafei, Susztak, Katalin, Li, Mingyao

“…Clustering and cell type classification are important steps in single-cell RNA-seq (scRNA-seq) analysis. As more and more scRNA-seq data are becoming…”
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Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling by Lyu, Yafei, Zauhar, Randy, Dana, Nicholas, Strang, Christianne E., Hu, Jian, Wang, Kui, Liu, Shanrun, Pan, Naifei, Gamlin, Paul, Kimble, James A., Messinger, Jeffrey D., Curcio, Christine A., Stambolian, Dwight, Li, Mingyao

“…Age‐related macular degeneration (AMD) is a blinding eye disease with no unifying theme for its etiology. We used single-cell RNA sequencing to analyze the…”
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Condition-adaptive fused graphical lasso (CFGL): An adaptive procedure for inferring condition-specific gene co-expression network by Lyu, Yafei, Xue, Lingzhou, Zhang, Feipeng, Koch, Hillary, Saba, Laura, Kechris, Katerina, Li, Qunhua

“…Co-expression network analysis provides useful information for studying gene regulation in biological processes. Examining condition-specific patterns of…”
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Transcriptional Profiling of the Small Intestine and the Colon Reveals Modulation of Gut Infection with Citrobacter rodentium According to the Vitamin A Status by Chai, Zhi, Lyu, Yafei, Chen, Qiuyan, Wei, Cheng-Hsin, Snyder, Lindsay M, Weaver, Veronika, Sebastian, Aswathy, Albert, István, Li, Qunhua, Cantorna, Margherita T, Ross, Catharine

“…Vitamin A (VA) deficiency and diarrheal diseases are both serious public health issues worldwide. VA deficiency is associated with impaired intestinal barrier…”
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A semi-parametric statistical model for integrating gene expression profiles across different platforms by Lyu, Yafei, Li, Qunhua

“…Determining differentially expressed genes (DEGs) between biological samples is the key to understand how genotype gives rise to phenotype. RNA-seq and…”
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Robust visual servoing formation tracking control for quadrotor UAV team by Liu, Hao, Lyu, Yafei, Zhao, Wanbing

“…This paper is concerned with the robust visual servoing formation tracking problem for a team of quadrotor unmanned aerial vehicles (UAVs). The quadrotor UAV…”
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Completely Distributed Time-Varying Formation Target Tracking for Quadrotor Team via Image-Based Visual Servoing by Liu, Hao, Liu, Deyuan, Lyu, Yafei

“…In this article, the completely distributed adaptive time-varying formation target tracking control problem for quadrotor team via image-based visual servoing…”
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MuSiC2: cell-type deconvolution for multi-condition bulk RNA-seq data by Fan, Jiaxin, Lyu, Yafei, Zhang, Qihuang, Wang, Xuran, Li, Mingyao, Xiao, Rui

“…Cell-type composition of intact bulk tissues can vary across samples. Deciphering cell-type composition and its changes during disease progression is an…”
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Robust time‐varying formation control for multiple underwater vehicles subject to nonlinearities and uncertainties by Liu, Hao, Lyu, Yafei, Lewis, Frank L., Wan, Yan

“…Summary This paper addresses the robust formation control problem for multiple autonomous underwater vehicles (AUVs) to achieve the desired formation…”
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Maximum Rank Reproducibility: A Nonparametric Approach to Assessing Reproducibility in Replicate Experiments by Philtron, Daisy, Lyu, Yafei, Li, Qunhua, Ghosh, Debashis

“…The identification of reproducible signals from the results of replicate high-throughput experiments is an important part of modern biological research. Often…”
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RNAseq studies reveal distinct transcriptional response to vitamin A deficiency in small intestine versus colon, uncovering novel vitamin A-regulated genes by Chai, Zhi, Lyu, Yafei, Chen, Qiuyan, Wei, Cheng-Hsin, Snyder, Lindsay M., Weaver, Veronika, Sebastian, Aswathy, Albert, István, Li, Qunhua, Cantorna, Margherita T., Ross, A. Catharine

“…•Mbl2, Cxcl14, and Nr0b2 may be new candidate genes regulated by Vitamin A (VA) in small intestine.•Mast cells and Tuft cells may be targets of VA in small…”
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Condition-adaptive fused graphical lasso by Lyu, Yafei, Xue, Lingzhou, Zhang, Feipeng, Koch, Hillary, Saba, Laura, Kechris, Katerina, Li, Qunhua

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Statistical Integration of Genomic Data Across Labs, Platforms and Experimental Conditions by Lyu, Yafei

“…High-throughput sequencing technology is the most important tool in modern biotechnological and biomedical research. Analyzing and interpreting such data is…”
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RNAseq Studies Reveal Distinct Transcriptional Response to Vitamin a (VA) Deficiency in Small Intestine (SI) versus Colon, Discovering Novel VA-regulated Genes (P15-002-19) by Chai, Zhi, Lyu, Yafei, Chen, Qiuyan, Wei, Cheng-Hsin, Snyder, Lindsay, Weaver, Veronika, Li, Qunhua, Cantorna, Margherita, Ross, A Catharine

“…To characterize and compare the impact of vitamin A (VA) deficiency on gene expression patterns in the small intestine (SI) and the colon, and to discover…”
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Allotetraploid and autotetraploid models of linkage analysis by Xu, Fang, Tong, Chunfa, Lyu, Yafei, Bo, Wenhao, Pang, Xiaoming, Wu, Rongling

“…As a group of important plant species in agriculture and biology, polyploids have been increasingly studied in terms of their genome structure and…”
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A QTL model to map the common genetic basis for correlative phenotypic plasticity by Zhou, Tao, Lyu, Yafei, Xu, Fang, Bo, Wenhao, Zhai, Yi, Zhang, Jian, Pang, Xiaoming, Zheng, Bingsong, Wu, Rongling

“…As an important mechanism for adaptation to heterogeneous environment, plastic responses of correlated traits to environmental alteration may also be…”
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A statistical model for QTL mapping in polysomic autotetraploids underlying double reduction by Xu, Fang, Lyu, Yafei, Tong, Chunfa, Wu, Weimiao, Zhu, Xuli, Yin, Danni, Yan, Qin, Zhang, Jian, Pang, Xiaoming, Tobias, Christian M, Wu, Rongling

“…As a group of economically important species, linkage mapping of polysomic autotetraploids, including potato, sugarcane and rose, is difficult to conduct due…”
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