Search Results - "Luo, Jingchu"

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors by Jin, Jinpu, Zhang, He, Kong, Lei, Gao, Ge, Luo, Jingchu

“…With the aim to provide a resource for functional and evolutionary study of plant transcription factors (TFs), we updated the plant TF database PlantTFDB to…”
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PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants by Jin, Jinpu, Tian, Feng, Yang, De-Chang, Meng, Yu-Qi, Kong, Lei, Luo, Jingchu, Gao, Ge

“…With the goal of providing a comprehensive, high-quality resource for both plant transcription factors (TFs) and their regulatory interactions with target…”
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GSDS 2.0: an upgraded gene feature visualization server by Hu, Bo, Jin, Jinpu, Guo, An-Yuan, Zhang, He, Luo, Jingchu, Gao, Ge

“…: Visualizing genes' structure and annotated features helps biologists to investigate their function and evolution intuitively. The Gene Structure Display…”
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GSA and BIGD: Filling the Gap of Bioinformatics Resource and Service in China by Luo, Jingchu

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LSD 3.0: a comprehensive resource for the leaf senescence research community by Li, Zhonghai, Zhang, Yang, Zou, Dong, Zhao, Yi, Wang, Hou-Ling, Zhang, Yi, Xia, Xinli, Luo, Jingchu, Guo, Hongwei, Zhang, Zhang

“…Abstract The leaf senescence database (LSD) is a comprehensive resource of senescence-associated genes (SAGs) and their corresponding mutants. Through manual…”
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Multilocus Analysis of Nucleotide Variation of Oryza sativa and Its Wild Relatives: Severe Bottleneck during Domestication of Rice by Zhu, Qihui, Zheng, Xiaoming, Luo, Jingchu, Gaut, Brandon S., Ge, Song

“…Varying degrees of reduction of genetic diversity in crops relative to their wild progenitors occurred during the process of domestication. Such information,…”
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Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family by Guo, An-Yuan, Zhu, Qi-Hui, Gu, Xiaocheng, Ge, Song, Yang, Ji, Luo, Jingchu

“…We made genome-wide analyses to explore the evolutionary process of the SBP-box gene family. We identified 120 SBP-box genes from nine species representing the…”
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Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice by Wang, Xiyin, Shi, Xiaoli, Li, Zhe, Zhu, Qihui, Kong, Lei, Tang, Wen, Ge, Song, Luo, Jingchu

“…The identification of chromosomal homology will shed light on such mysteries of genome evolution as DNA duplication, rearrangement and loss. Several approaches…”
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Duplication and DNA segmental loss in the rice genome: implications for diploidization by Wang, Xiyin, Shi, Xiaoli, Hao, Bailin, Ge, Song, Luo, Jingchu

“…• Large-scale duplication events have been recently uncovered in the rice genome, but different interpretations were proposed regarding the extent of the…”
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LSD 4.0: an improved database for comparative studies of leaf senescence by Cao, Jie, Zhang, Yang, Tan, Shuya, Yang, Qi, Wang, Hou-Ling, Xia, Xinli, Luo, Jingchu, Guo, Hongwei, Zhang, Zhang, Li, Zhonghai

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DATF: a database of Arabidopsis transcription factors by Guo, Anyuan, He, Kun, Liu, Di, Bai, Shunong, Gu, Xiaocheng, Wei, Liping, Luo, Jingchu

“…We have probably developed the most comprehensive database of Arabidopsis transcription factors (DATF). The DATF contains known and predicted Arabidopsis…”
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Bringing Biocuration to China by Zhang, Zhang, Zhu, Weimin, Luo, Jingchu

“…Biocuration involves adding value to biomedical data by the processes of standardiza- tion, quality control and information transferring （also known as data…”
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ABrowse - a customizable next-generation genome browser framework by Kong, Lei, Wang, Jun, Zhao, Shuqi, Gu, Xiaocheng, Luo, Jingchu, Gao, Ge

“…With the rapid growth of genome sequencing projects, genome browser is becoming indispensable, not only as a visualization system but also as an interactive…”
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DRTF: a database of rice transcription factors by Gao, Ge, Zhong, Yingfu, Guo, Anyuan, Zhu, Qihui, Tang, Wen, Zheng, Weimou, Gu, Xiaocheng, Wei, Liping, Luo, Jingchu

“…DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by…”
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Expression pattern divergence of duplicated genes in rice by Li, Zhe, Zhang, He, Ge, Song, Gu, Xiaocheng, Gao, Ge, Luo, Jingchu

“…Genome-wide duplication is ubiquitous during diversification of the angiosperms, and gene duplication is one of the most important mechanisms for evolutionary…”
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OsMADS58 Stabilizes Gene Regulatory Circuits during Rice Stamen Development by Shen, Liping, Tian, Feng, Cheng, Zhukuan, Zhao, Qiang, Feng, Qi, Zhao, Yan, Han, Bin, Fang, Yuhan, Lin, Yanan, Chen, Rui, Wang, Donghui, Sun, Wenfeng, Sun, Jiaqi, Zeng, Hongyun, Yao, Nan, Gao, Ge, Luo, Jingchu, Xu, Zhihong, Bai, Shunong

“…Rice (Oryza sativa) OsMADS58 is a C-class MADS box protein, and characterization of a transposon insertion mutant osmads58 suggested that OsMADS58 plays a role…”
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PCAS--a precomputed proteome annotation database resource by Zhang, Yong, Yin, Yanbin, Chen, Yunjia, Gao, Ge, Yu, Peng, Luo, Jingchu, Jiang, Ying

“…Many model proteomes or "complete" sets of proteins of given organisms are now publicly available. Much effort has been invested in computational annotation of…”
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Rice-Map: a new-generation rice genome browser by Wang, Jun, Kong, Lei, Zhao, Shuqi, Zhang, He, Tang, Liang, Li, Zhe, Gu, Xiaocheng, Luo, Jingchu, Gao, Ge

“…The concurrent release of rice genome sequences for two subspecies (Oryza sativa L. ssp. japonica and Oryza sativa L. ssp. indica) facilitates rice studies at…”
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Computational identification of plant transcription factors and the construction of the PlantTFDB database by He, Kun, Guo, An-Yuan, Gao, Ge, Zhu, Qi-Hui, Liu, Xiao-Chuan, Zhang, He, Chen, Xin, Gu, Xiaocheng, Luo, Jingchu

“…Transcription factors (TFs) play an important role in gene regulation. Computational identification and annotation of TFs at genome scale are the first step…”
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ABCGrid: Application for Bioinformatics Computing Grid by Sun, Ying, Zhao, Shuqi, Yu, Huashan, Gao, Ge, Luo, Jingchu

“…We have developed a package named Application for Bioinformatics Computing Grid (ABCGrid). ABCGrid was designed for biology laboratories to use heterogeneous…”
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