Search Results - "Ludwig, Christina"

Data‐independent acquisition‐based SWATH‐MS for quantitative proteomics: a tutorial by Ludwig, Christina, Gillet, Ludovic, Rosenberger, George, Amon, Sabine, Collins, Ben C, Aebersold, Ruedi

“…Many research questions in fields such as personalized medicine, drug screens or systems biology depend on obtaining consistent and quantitatively accurate…”
Get full text

Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline by Sharma, Vagisha, Eckels, Josh, Schilling, Birgit, Ludwig, Christina, Jaffe, Jacob D., MacCoss, Michael J., MacLean, Brendan

“…To address the growing need for a centralized, community resource of published results processed with Skyline, and to provide reviewers and readers immediate…”
Get full text

Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry by Ludwig, Christina, Claassen, Manfred, Schmidt, Alexander, Aebersold, Ruedi

“…For many research questions in modern molecular and systems biology, information about absolute protein quantities is imperative. This information includes,…”
Get full text

Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing by Zecha, Jana, Lee, Chien-Yun, Bayer, Florian P., Meng, Chen, Grass, Vincent, Zerweck, Johannes, Schnatbaum, Karsten, Michler, Thomas, Pichlmair, Andreas, Ludwig, Christina, Kuster, Bernhard

“…As the COVID-19 pandemic continues to spread, research on SARS-CoV-2 is also rapidly evolving and the number of associated manuscripts on preprint servers is…”
Get full text

Large-Scale Quantitative Assessment of Different In-Solution Protein Digestion Protocols Reveals Superior Cleavage Efficiency of Tandem Lys-C/Trypsin Proteolysis over Trypsin Digestion by Glatter, Timo, Ludwig, Christina, Ahrné, Erik, Aebersold, Ruedi, Heck, Albert J. R, Schmidt, Alexander

“…The complete and specific proteolytic cleavage of protein samples into peptides is crucial for the success of every shotgun LC–MS/MS experiment. In particular,…”
Get full text

Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic by Nelson, Chase W, Ardern, Zachary, Goldberg, Tony L, Meng, Chen, Kuo, Chen-Hao, Ludwig, Christina, Kolokotronis, Sergios-Orestis, Wei, Xinzhu

“…Understanding the emergence of novel viruses requires an accurate and comprehensive annotation of their genomes. Overlapping genes (OLGs) are common in viruses…”
Get full text

Inference and quantification of peptidoforms in large sample cohorts by SWATH-MS by Rosenberger, George, Liu, Yansheng, Röst, Hannes L, Ludwig, Christina, Buil, Alfonso, Bensimon, Ariel, Soste, Martin, Spector, Tim D, Dermitzakis, Emmanouil T, Collins, Ben C, Malmström, Lars, Aebersold, Ruedi

“…Detection of post-translational modifications by mass spectrometry is enhanced with an analytic method for data-independent acquisition proteomics. Consistent…”
Get full text

Regulation of yeast central metabolism by enzyme phosphorylation by Oliveira, Ana Paula, Ludwig, Christina, Picotti, Paola, Kogadeeva, Maria, Aebersold, Ruedi, Sauer, Uwe

“…As a frequent post‐translational modification, protein phosphorylation regulates many cellular processes. Although several hundred phosphorylation sites have…”
Get full text

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions by Mori, Matteo, Zhang, Zhongge, Banaei‐Esfahani, Amir, Lalanne, Jean‐Benoît, Okano, Hiroyuki, Collins, Ben C, Schmidt, Alexander, Schubert, Olga T, Lee, Deok‐Sun, Li, Gene‐Wei, Aebersold, Ruedi, Hwa, Terence, Ludwig, Christina

“…Accurate measurements of cellular protein concentrations are invaluable to quantitative studies of gene expression and physiology in living cells. Here, we…”
Get full text

Analyzing bioactive effects of the minor hop compound xanthohumol C on human breast cancer cells using quantitative proteomics by Roehrer, Simon, Stork, Verena, Ludwig, Christina, Minceva, Mirjana, Behr, Jürgen

“…Minor prenylated hop compounds have been attracting increasing attention due to their promising anticarcinogenic properties. Even after intensive purification…”
Get full text

Profiling of the Helicobacter pylori redox switch HP1021 regulon using a multi-omics approach by Noszka, Mateusz, Strzałka, Agnieszka, Muraszko, Jakub, Kolenda, Rafał, Meng, Chen, Ludwig, Christina, Stingl, Kerstin, Zawilak-Pawlik, Anna

“…The gastric human pathogen Helicobacter pylori has developed mechanisms to combat stress factors, including reactive oxygen species (ROS). Here, we present a…”
Get full text

Automatic mapping of national surface water with OpenStreetMap and Sentinel-2 MSI data using deep learning by Li, Hao, Zech, Johannes, Ludwig, Christina, Fendrich, Sascha, Shapiro, Aurelie, Schultz, Michael, Zipf, Alexander

“…•Automatic surface water mapping by deep learning of Sentinel-2 and OpenStreetMap.•An open surface water layer for Germany (10 m) using a national deep…”
Get full text

Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis by Oliveira, Ana Paula, Ludwig, Christina, Zampieri, Mattia, Weisser, Hendrik, Aebersold, Ruedi, Sauer, Uwe

“…Phosphoproteomics studies have unraveled the extent of protein phosphorylation as a key cellular regulation mechanism, but assigning functionality to specific…”
Get more information

azyx-1 is a new gene that overlaps with zyxin and affects its translation in C. elegans, impacting muscular integrity and locomotion by Parmar, Bhavesh S, Kieswetter, Amanda, Geens, Ellen, Vandewyer, Elke, Ludwig, Christina, Temmerman, Liesbet

“…Overlapping genes are widely prevalent; however, their expression and consequences are poorly understood. Here, we describe and functionally characterize a…”
Get full text

Mapping Public Urban Green Spaces Based on OpenStreetMap and Sentinel-2 Imagery Using Belief Functions by Ludwig, Christina, Hecht, Robert, Lautenbach, Sven, Schorcht, Martin, Zipf, Alexander

“…Public urban green spaces are important for the urban quality of life. Still, comprehensive open data sets on urban green spaces are not available for most…”
Get full text

Label-free quantitative proteomic analysis reveals the lifestyle of Lactobacillus hordei in the presence of Sacchromyces cerevisiae by Xu, Di, Behr, Jürgen, Geißler, Andreas J., Bechtner, Julia, Ludwig, Christina, Vogel, Rudi F.

“…Water kefir is a fermented beverage, which is traditionally prepared from sucrose, kefir grains, dried or fresh fruits, and water. L. hordei and S. cerevisiae…”
Get full text

Comparative Proteomics of Meat Spoilage Bacteria Predicts Drivers for Their Coexistence on Modified Atmosphere Packaged Meat by Kolbeck, Sandra, Ludwig, Christina, Meng, Chen, Hilgarth, Maik, Vogel, Rudi F

“…Besides intrinsic and extrinsic factors such as antagonism for organic substrates or temperature, the storage atmosphere of meat has a high influence on the…”
Get full text

Dissecting the sequence determinants for dephosphorylation by the catalytic subunits of phosphatases PP1 and PP2A by Hoermann, Bernhard, Kokot, Thomas, Helm, Dominic, Heinzlmeir, Stephanie, Chojnacki, Jeremy E., Schubert, Thomas, Ludwig, Christina, Berteotti, Anna, Kurzawa, Nils, Kuster, Bernhard, Savitski, Mikhail M., Köhn, Maja

“…The phosphatases PP1 and PP2A are responsible for the majority of dephosphorylation reactions on phosphoserine (pSer) and phosphothreonine (pThr), and are…”
Get full text

Author Correction: From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions by Mori, Matteo, Zhang, Zhongge, Banaei-Esfahani, Amir, Lalanne, Jean-Benoît, Okano, Hiroyuki, Collins, Ben C, Schmidt, Alexander, Schubert, Olga T, Lee, Deok-Sun, Li, Gene-Wei, Aebersold, Ruedi, Hwa, Terence, Ludwig, Christina

Get full text

Identification of a novel xanthan-binding module of a multi-modular Cohnella sp. xanthanase by Han, Rui, Baudrexl, Melanie, Ludwig, Christina, Berezina, Oksana V, Rykov, Sergey V, Liebl, Wolfgang

“…A new strain of xanthan-degrading bacteria identified as sp. has been isolated from a xanthan thickener for food production. The strain was able to utilize…”
Get full text