Search Results - "Lopes, Fabrício Martins"

Letter on the results of the BASiNET method in the paper ‘A systematic evaluation of computational tools for lncRNA identification’ by Martins Lopes, Fabrício, Pimenta-Zanon, Matheus H

“…Abstract This letter points out a conceptual error made by the authors of a published paper, which presents a review and evaluation of computational methods in…”
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Analysis of co-authorship networks among Brazilian graduate programs in computer science by Nunes da Silva, Junior, Alex, Breve, Matheus Montanini, Mena-Chalco, Jesús Pascual, Lopes, Fabrício Martins

“…The growth and popularization of platforms on scientific production has been the subject of several studies, producing relevant analyses of co-authorship…”
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Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods by Costa-Silva, Juliana, Domingues, Douglas S., Menotti, David, Hungria, Mariangela, Lopes, Fabrício Martins

“…•Review of computational methods for differential gene expression (DEG) analysis.•Contextualization of the steps involved in DEG analysis, their properties and…”
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Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation by Barros-Carvalho, Gesiele Almeida, Hungria, Mariangela, Lopes, Fabrício Martins, Van Sluys, Marie-Anne

“…Bradyrhizobium diazoefficiens CPAC 7 and Bradyrhizobium japonicum CPAC 15 are broadly used in commercial inoculants in Brazil, contributing to most of the…”
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Inference of gene regulatory networks from time series by Tsallis entropy by Lopes, Fabrício Martins, de Oliveira, Evaldo A, Cesar, Jr, Roberto M

“…The inference of gene regulatory networks (GRNs) from large-scale expression profiles is one of the most challenging problems of Systems Biology nowadays. Many…”
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RNA-Seq differential expression analysis: An extended review and a software tool by Costa-Silva, Juliana, Domingues, Douglas, Lopes, Fabricio Martins

“…The correct identification of differentially expressed genes (DEGs) between specific conditions is a key in the understanding phenotypic variation…”
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BASiNET-BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification by Ito, Eric Augusto, Katahira, Isaque, Vicente, Fábio Fernandes da Rocha, Pereira, Luiz Filipe Protasio, Lopes, Fabrício Martins

“…Abstract With the emergence of Next Generation Sequencing (NGS) technologies, a large volume of sequence data in particular de novo sequencing was rapidly…”
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Brazilian bibliometric coauthorship networks by Mena-Chalco, Jesús Pascual, Digiampietri, Luciano Antonio, Lopes, Fabrício Martins, Cesar Junior, Roberto Marcondes

“…The Brazilian Lattes Platform is an important academic/résumé data set that registers all academic activities of researchers associated with different major…”
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Assessing Active Learning Strategies to Improve the Quality Control of the Soybean Seed Vigor by Pereira, Douglas Felipe, Bugatti, Pedro Henrique, Lopes, Fabricio Martins, de Souza, Andre Luis Siqueira Marques, Saito, Priscila Tiemi Maeda

“…Seed companies increasingly seek excellence in production quality through rigorous processes, such as the tetrazolium test (TZ test) and the vigor definition…”
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Feature selection environment for genomic applications by Lopes, Fabrício Martins, Martins, Jr, David Corrêa, Cesar, Jr, Roberto M

“…Feature selection is a pattern recognition approach to choose important variables according to some criteria in order to distinguish or explain certain…”
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Feature selection environment for genomic applications by Lopes, Fabrício Martins, Martins, David Corrêa, Jr, Cesar, Roberto M., Jr

“…Doc number: 285 Abstract…”
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Combining SURF descriptor and complex networks for face recognition by Piotto, Joao Gilberto S., Martins Lopes, Fabricio

“…This paper presents a new approach for facial recognition based on complex networks theory. Initially, the network nodes are defined by the pixels selected…”
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Erratum to: Feature selection environment for genomic applications by Lopes, Fabrício Martins, Martins, David Corrêa, Cesar, Roberto M

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BASiNETEntropy: an alignment-free method for classification of biological sequences through complex networks and entropy maximization by Breve, Murilo Montanini, Pimenta-Zanon, Matheus Henrique, Lopes, Fabrício Martins

“…The discovery of nucleic acids and the structure of DNA have brought considerable advances in the understanding of life. The development of next-generation…”
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Complex Network-Based Approach for Feature Extraction and Classification of Musical Genres by Pimenta-Zanon, Matheus Henrique, Bressan, Glaucia Maria, Lopes, Fabrício Martins

“…Musical genre's classification has been a relevant research topic. The association between music and genres is fundamental for the media industry, which…”
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A feature extraction approach based on complex networks for genomic sequences recognition by Conque, Bruno M. M., Kashiwabara, Andre Yoshiaki, Martins Lopes, Fabricio

“…The development of new genomic sequencing techniques leads to a generation of a huge volume of biological data. In this context, it is important to develop new…”
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A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis by Azevedo, Helton, Lopes, Fabricio, Silla, Paulo, Hungria, Mariangela

“…Biological nitrogen fixation, with an emphasis on the legume-rhizobia symbiosis, is a key process for agriculture and the environment, allowing the replacement…”
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Analysis of co-authorship networks among Brazilian graduate programs in computer science by da Silva, Alex Junior Nunes, Breve, Matheus Montanini, Mena-Chalco, Jesús Pascual, Lopes, Fabrício Martins

“…The growth and popularization of platforms on scientific production have been the subject of several studies, producing relevant analyses of coauthorship…”
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Computational Analysis of Transposable Elements and CircRNAs in Plants by Oliveira, Liliane Santana, Patera, Andressa Caroline, Domingues, Douglas Silva, Sanches, Danilo Sipoli, Lopes, Fabricio Martins, Bugatti, Pedro Henrique, Saito, Priscila Tiemi Maeda, Maracaja-Coutinho, Vinicius, Durham, Alan Mitchell, Paschoal, Alexandre Rossi

“…This chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs)…”
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An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy by Barros-Carvalho, Gesiele Almeida, Van Sluys, Marie-Anne, Lopes, Fabricio Martins

“…Recently, there has been an increase in the number of whole bacterial genomes sequenced, mainly due to the advancing of next-generation sequencing…”
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