Search Results - "Loizides, Charalambos"
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Targeted capture enrichment assay for non-invasive prenatal testing of large and small size sub-chromosomal deletions and duplications
Published in PloS one (03-02-2017)“…Noninvasive prenatal testing (NIPT) using whole genome and targeted sequencing has become increasingly accepted for clinical detection of Trisomy 21 and sex…”
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MeDIP combined with in-solution targeted enrichment followed by NGS: Inter-individual methylation variability of fetal-specific biomarkers and their implementation in a proof of concept study for NIPT
Published in PloS one (11-06-2018)“…DNA methylation is the most characterized epigenetic process exhibiting stochastic variation across different tissues and individuals. In non-invasive prenatal…”
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Investigation of Clinically Significant Molecular Aberrations in Patients with Prostate Cancer: Implications for Personalized Treatment, Prognosis and Genetic Testing
Published in International journal of molecular sciences (01-07-2023)“…The data on tumor molecular profiling of European patients with prostate cancer is limited. Our aim was to evaluate the prevalence and prognostic and…”
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4
Model-Based Tumor Growth Dynamics and Therapy Response in a Mouse Model of De Novo Carcinogenesis
Published in PloS one (09-12-2015)“…Tumorigenesis is a complex, multistep process that depends on numerous alterations within the cell and contribution from the surrounding stroma. The ability to…”
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Targeted capture enrichment followed by NGS: development and validation of a single comprehensive NIPT for chromosomal aneuploidies, microdeletion syndromes and monogenic diseases
Published in Molecular cytogenetics (21-11-2019)“…Non-invasive prenatal testing (NIPT) has been widely adopted for the detection of fetal aneuploidies and microdeletion syndromes, nevertheless, limited…”
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Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern
Published in Viruses (30-12-2022)“…The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in December 2019 resulted in the coronavirus disease 2019 (COVID-19) pandemic,…”
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EORTC-SPECTA Arcagen study, comprehensive genomic profiling and treatment adaptation of rare thoracic cancers
Published in NPJ precision oncology (16-02-2024)“…Arcagen (NCT02834884) is a European prospective study aiming at defining the molecular landscape of rare cancers for treatment guidance. We present data from…”
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Whole transcriptome sequence data of 5-FU sensitive and 5-FU resistant tumors generated in a mouse model of de novo carcinogenesis
Published in Data in brief (01-10-2018)“…We have performed whole transcriptome sequencing of 5-FU resistant and 5-FU sensitive tumors generated in a mouse model of de novo carcinogenesis that closely…”
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Development of a new methylation‐based fetal fraction estimation assay using multiplex ddPCR
Published in Molecular genetics & genomic medicine (01-02-2020)“…Background Non‐invasive prenatal testing (NIPT) for fetal aneuploidies has rapidly been incorporated into clinical practice. Current NGS‐based methods can…”
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A mixed effects model framework for the assessment of nonlinear interactions in event-related potentials (ERPs) elicited by identical successive stimuli
Published in 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (01-01-2014)“…The recording of brain event-related potentials (ERPs) is a widely used technique to investigate the neural basis of sensory perception and cognitive…”
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Conference Proceeding Journal Article -
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Assessment of nonlinear interactions in event-related potentials elicited by stimuli presented at short interstimulus intervals using single-trial data
Published in Journal of neurophysiology (01-06-2015)“…The recording of brain event-related potentials (ERPs) is a widely used technique to investigate the neural basis of sensory perception and cognitive…”
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Multiprocess Dynamic Modeling of Tumor Evolution with Bayesian Tumor-Specific Predictions
Published in Annals of biomedical engineering (01-05-2014)“…We propose a sequential probabilistic mixture model for individualized tumor growth forecasting. In contrast to conventional deterministic methods for…”
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13
Molecular profile and clinical features of patients with gliomas using a broad targeted next generation‑sequencing panel
Published in Oncology letters (01-01-2023)“…Gliomas are the most common malignant primary brain tumors characterized by poor prognosis. The genotyping of tumors using next generation sequencing (NGS)…”
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Clinical Significance of Germline Cancer Predisposing Variants in Unselected Patients with Pancreatic Adenocarcinoma
Published in Cancers (08-01-2021)“…Our aim was to determine the prevalence, prognostic and predictive role of germline pathogenic/likely pathogenic variants (P/LPVs) in cancer predisposing genes…”
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Extensions of the case-control design in genome-wide association studies
Published 01-01-2012“…The case-control design is one of the most commonly used designs in genome- wide asociation studies. When we increase the sample size of either the controls…”
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Dissertation -
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Whole-genome fetal and maternal DNA methylation analysis using MeDIP-NGS for the identification of differentially methylated regions
Published in Genetics Research (11-11-2016)“…DNA methylation is an epigenetic marker that has been shown to vary significantly across different tissues. Taking advantage of the methylation differences…”
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Journal Article