Search Results - "Loaiza, Cristian"

PredHPI: an integrated web server platform for the detection and visualization of host–pathogen interactions using sequence-based methods by Loaiza, Cristian D, Kaundal, Rakesh

“…Abstract Motivation Understanding the mechanisms underlying infectious diseases is fundamental to develop prevention strategies. Host–pathogen interactions…”
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Plant-mSubP: a computational framework for the prediction of single- and multi-target protein subcellular localization using integrated machine-learning approaches by Sahu, Sitanshu S, Loaiza, Cristian D, Kaundal, Rakesh

“…Abstract The subcellular localization of proteins is very important for characterizing its function in a cell. Accurate prediction of the subcellular locations…”
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deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host–pathogen protein–protein interactions by Kaundal, Rakesh, Loaiza, Cristian D, Duhan, Naveen, Flann, Nicholas

“…Abstract Host-pathogen protein interactions (HPPIs) play vital roles in many biological processes and are directly involved in infectious diseases. With the…”
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NGSEP3: accurate variant calling across species and sequencing protocols by Tello, Daniel, Gil, Juanita, Loaiza, Cristian D, Riascos, John J, Cardozo, Nicolás, Duitama, Jorge

“…Abstract Motivation Accurate detection, genotyping and downstream analysis of genomic variants from high-throughput sequencing data are fundamental features in…”
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In silico prediction of host-pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets by Loaiza, Cristian D, Duhan, Naveen, Lister, Matthew, Kaundal, Rakesh

“…The aerobic, Gram-negative motile bacillus, Burkholderia pseudomallei is a facultative intracellular bacterium causing melioidosis, a critical disease of…”
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GreeningDB: A Database of Host–Pathogen Protein–Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease by Loaiza, Cristian D., Duhan, Naveen, Kaundal, Rakesh

“…The Citrus genus comprises some of the most important and commonly cultivated fruit plants. Within the last decade, citrus greening disease (also known as…”
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citSATdb : Genome-Wide Simple Sequence Repeat (SSR) Marker Database of Citrus Species for Germplasm Characterization and Crop Improvement by Duhan, Naveen, Meshram, Manish, Loaiza, Cristian D, Kaundal, Rakesh

“…Microsatellites or simple sequence repeats (SSRs) are popular co-dominant markers that play an important role in crop improvement. To enhance genomic resources…”
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Unraveling the Genome of a High Yielding Colombian Sugarcane Hybrid by Trujillo-Montenegro, Jhon Henry, Rodríguez Cubillos, María Juliana, Loaiza, Cristian Darío, Quintero, Manuel, Espitia-Navarro, Héctor Fabio, Salazar Villareal, Fredy Antonio, Viveros Valens, Carlos Arturo, González Barrios, Andrés Fernando, De Vega, José, Duitama, Jorge, Riascos, John J.

“…Recent developments in High Throughput Sequencing (HTS) technologies and bioinformatics, including improved read lengths and genome assemblers allow the…”
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274 Development of CTX112 a next generation allogeneic multiplexed CRISPR-edited CART cell therapy with disruptions of the TGFBR2 and Regnase-1 genes for improved manufacturing and potency by Kalaitzidis, Demetrios, Ghonime, Mohammed, Chain, Robert, Jaishankar, Nivedita, Settipane, Davis, Padalia, Zinkal, Zakas, Lauren, Kuppuraju, Meghna, Tetteh, Paul, Dequeant, Mary-Lee, Karnik, Sushant, Massilamany, Chandirasegaran, McEwan, Brigid, Dar, Henia, Allen, Melanie, Serwer, Laura, Nguyen, Thao, Butler-Gauthier, Melanie, Sripakdeevong, Parin, Nagar, Shashwat, Tang, Yin, Flanagan, Nicole, Huang, Elaine, Phuyal, Shashwant, Dunn, Andrew, Koch, Elizabeth, Sula, Erisa, Waldman, Jacob, Zhang, Maria Lei, Loaiza, Cristian, Thorstensen, Erin, Steiger, Keith, Schum, Katie, Urbaez, Kayla, Ma, Anna, Weaver, Annie Yang, Finch, Christopher, Cohen, Sarah, Morrow, PK, Benton, Mark, Terrett, Jonathan

“…BackgroundCTX110, a CD19-directed first-generation CRISPR-edited CAR T cell therapeutic candidate for B-cell lymphoma, has induced clinical responses and…”
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Abstract ND02: CTX112 and CTX131: Next-generation CRISPR/Cas9-engineered allogeneic (allo) CAR T cells incorporating novel edits that increase potency and efficacy in the treatment of lymphoid and solid tumors by Terrett, Jonathan A., Kalaitzidis, Demetrios, Dequeant, Mary-Lee, Karnik, Sushant, Ghonime, Mohammed, Guo, Changan, Chain, Robert, Heath, Heidi, Jaishankar, Nivedita, Yuen, Rachel, Settipane, Davis, Padalia, Zinkal, Zakas, Lauren, Kuppuraju, Meghna, Tetteh, Paul, Massilamany, Chandirasegaran, McEwan, Brigid, Leary, Glenn, Dar, Henia, Ferulo, Daniel, Allen, Melanie, Tipton, Kimberley, Serwer, Laura, Nguyen, Thao, Butler-Gauthier, Melanie, Sripakdeevong, Parin, Nagar, Shashwat D., Tang, Yin, Chaudhari, Hemangi, Flanagan, Nicole, Huang, Elaine, Phuyal, Shashwant, Koch, Elizabeth, Dunn, Andrew, Sula, Erisa, Waldman, Jacob, Loaiza, Cristian, Zhang, Maria Lei, Thorstensen, Erin, Steiger, Keith, Schum, Katie, Urbaez, Kayla, Benton, Mark, Ma, Anna, Cohen, Sarah, Weaver, Annie, Finch, Christopher, Morrow, Phuong Khanh

“…Abstract Allo CAR T cells represent an “off-the-shelf” treatment option that addresses the unmet need for immediately available, potentially curative…”
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Numerical evaluation of a combined chemical enhanced oil recovery process with polymer and nanoparticles based on experimental observations by Loaiza, Cristian S., Patiño, Juan F., Mejía, Juan M.

“…Polymer flooding is the most widely implemented chemical enhanced oil recovery (CEOR) process. However, polymer degradation, caused by chemical, thermal, and…”
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