Search Results - "Lleres, David"
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Regulatory flexibility in the Nrf2-mediated stress response is conferred by conformational cycling of the Keap1-Nrf2 protein complex
Published in Proceedings of the National Academy of Sciences - PNAS (17-09-2013)“…The transcription factor NF-E2 p45-related factor 2 (Nrf2), a master regulator of cytoprotective genes, is controlled by dimeric Kelch-like ECH associated…”
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Monitoring Keap1–Nrf2 interactions in single live cells
Published in Biotechnology advances (01-11-2014)“…The transcription factor NF-E2 p45-related factor 2 (Nrf2) and its negative regulator Kelch-like ECH associated protein 1 (Keap1) control the expression of…”
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3
Exploring chromatin structural roles of non-coding RNAs at imprinted domains
Published in Biochemical Society transactions (27-08-2021)“…Different classes of non-coding RNA (ncRNA) influence the organization of chromatin. Imprinted gene domains constitute a paradigm for exploring functional long…”
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CTCF modulates allele-specific sub-TAD organization and imprinted gene activity at the mouse Dlk1-Dio3 and Igf2-H19 domains
Published in Genome Biology (12-12-2019)“…Genomic imprinting is essential for mammalian development and provides a unique paradigm to explore intra-cellular differences in chromatin configuration. So…”
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Evidence for low nanocompaction of heterochromatin in living embryonic stem cells
Published in The EMBO journal (15-06-2023)“…Despite advances in the identification of chromatin regulators and genome interactions, the principles of higher‐order chromatin structure have remained…”
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Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing
Published in Nature communications (12-09-2018)“…The decompaction and re-establishment of chromatin organization immediately after mitosis is essential for genome regulation. Mechanisms underlying chromatin…”
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Meg3 Non-coding RNA Expression Controls Imprinting by Preventing Transcriptional Upregulation in cis
Published in Cell reports (Cambridge) (10-04-2018)“…Although many long non-coding RNAs (lncRNAs) are imprinted, their roles often remain unknown. The Dlk1-Dio3 domain expresses the lncRNA Meg3 and multiple…”
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Quantitative analysis of chromatin compaction in living cells using FLIM-FRET
Published in The Journal of cell biology (16-11-2009)“…We present a quantitative Förster resonance energy transfer (FRET)-based assay using multiphoton fluorescence lifetime imaging microscopy (FLIM) to measure…”
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9
ICR Noncoding RNA Expression Controls Imprinting and DNA Replication at the Dlk1-Dio3 Domain
Published in Developmental cell (13-10-2014)“…Imprinted genes play essential roles in development, and their allelic expression is mediated by imprinting control regions (ICRs). The Dlk1-Dio3 locus is…”
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10
Modulation of Higher Order Chromatin Conformation in Mammalian Cell Nuclei Can Be Mediated by Polyamines and Divalent Cations
Published in PloS one (26-06-2013)“…The organisation of the large volume of mammalian genomic DNA within cell nuclei requires mechanisms to regulate chromatin compaction involving the reversible…”
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Quantitative FLIM-FRET Microscopy to Monitor Nanoscale Chromatin Compaction In Vivo Reveals Structural Roles of Condensin Complexes
Published in Cell reports (Cambridge) (14-02-2017)“…How metazoan genomes are structured at the nanoscale in living cells and tissues remains unknown. Here, we adapted a quantitative FRET (Förster resonance…”
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12
The 20S proteasome activator PA28γ controls the compaction of chromatin
Published in Journal of cell science (01-02-2021)“…PA28γ (also known as PSME3), a nuclear activator of the 20S proteasome, is involved in the degradation of several proteins regulating cell growth and…”
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13
Direct interaction between hnRNP-M and CDC5L/PLRG1 proteins affects alternative splice site choice
Published in EMBO reports (01-06-2010)“…Heterogeneous nuclear ribonucleoprotein‐M (hnRNP‐M) is an abundant nuclear protein that binds to pre‐mRNA and is a component of the spliceosome complex. A…”
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14
Epigenetic deregulation of genomic imprinting in humans: causal mechanisms and clinical implications
Published in Epigenomics (01-12-2013)“…Mammalian genes controlled by genomic imprinting play important roles in development and diverse postnatal processes. A growing number of congenital disorders…”
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15
Spatial mapping of splicing factor complexes involved in exon and intron definition
Published in The Journal of cell biology (16-06-2008)“…We have analyzed the interaction between serine/arginine-rich (SR) proteins and splicing components that recognize either the 5' or 3' splice site. Previously,…”
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16
Perturbation of chromatin structure globally affects localization and recruitment of splicing factors
Published in PloS one (12-11-2012)“…Chromatin structure is an important factor in the functional coupling between transcription and mRNA processing, not only by regulating alternative splicing…”
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17
A Role for Caenorhabditis elegans COMPASS in Germline Chromatin Organization
Published in Cells (Basel, Switzerland) (08-09-2020)“…Deposition of histone H3 lysine 4 (H3K4) methylation at promoters is catalyzed by the SET1/COMPASS complex and is associated with context-dependent effects on…”
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Quantitative Kinetic Analysis of Nucleolar Breakdown and Reassembly during Mitosis in Live Human Cells
Published in The Journal of cell biology (13-09-2004)“…One of the great mysteries of the nucleolus surrounds its disappearance during mitosis and subsequent reassembly at late mitosis. Here, the relative dynamics…”
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19
The cell proliferation antigen Ki-67 organises heterochromatin
Published in eLife (07-03-2016)“…Antigen Ki-67 is a nuclear protein expressed in proliferating mammalian cells. It is widely used in cancer histopathology but its functions remain unclear…”
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KEAP1-modifying small molecule reveals muted NRF2 signaling responses in neural stem cells from Huntington’s disease patients
Published in Proceedings of the National Academy of Sciences - PNAS (06-06-2017)“…The activity of the transcription factor nuclear factor-erythroid 2 p45-derived factor 2 (NRF2) is orchestrated and amplified through enhanced transcription of…”
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