Search Results - "Lippman, Zachary B"

Revolutions in agriculture chart a course for targeted breeding of old and new crops by Eshed, Yuval, Lippman, Zachary B

“…The dominance of the major crops that feed humans and their livestock arose from agricultural revolutions that increased productivity and adapted plants to…”
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Engineering Quantitative Trait Variation for Crop Improvement by Genome Editing by Rodríguez-Leal, Daniel, Lemmon, Zachary H., Man, Jarrett, Bartlett, Madelaine E., Lippman, Zachary B.

“…Major advances in crop yields are needed in the coming decades. However, plant breeding is currently limited by incremental improvements in quantitative traits…”
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RaGOO: fast and accurate reference-guided scaffolding of draft genomes by Alonge, Michael, Soyk, Sebastian, Ramakrishnan, Srividya, Wang, Xingang, Goodwin, Sara, Sedlazeck, Fritz J, Lippman, Zachary B, Schatz, Michael C

“…We present RaGOO, a reference-guided contig ordering and orienting tool that leverages the speed and sensitivity of Minimap2 to accurately achieve…”
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Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing by Alonge, Michael, Lebeigle, Ludivine, Kirsche, Melanie, Jenike, Katie, Ou, Shujun, Aganezov, Sergey, Wang, Xingang, Lippman, Zachary B, Schatz, Michael C, Soyk, Sebastian

“…Advancing crop genomics requires efficient genetic systems enabled by high-quality personalized genome assemblies. Here, we introduce RagTag, a toolset for…”
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Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection by Hendelman, Anat, Zebell, Sophia, Rodriguez-Leal, Daniel, Dukler, Noah, Robitaille, Gina, Wu, Xuelin, Kostyun, Jamie, Tal, Lior, Wang, Peipei, Bartlett, Madelaine E., Eshed, Yuval, Efroni, Idan, Lippman, Zachary B.

“…Divergence of gene function is a hallmark of evolution, but assessing functional divergence over deep time is not trivial. The few alleles available for…”
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Control of inflorescence architecture in tomato by BTB/POZ transcriptional regulators by Xu, Cao, Park, Soon Ju, Van Eck, Joyce, Lippman, Zachary B

“…Plant productivity depends on inflorescences, flower-bearing shoots that originate from the stem cell populations of shoot meristems. Inflorescence…”
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Rapid customization of Solanaceae fruit crops for urban agriculture by Kwon, Choon-Tak, Heo, Jung, Lemmon, Zachary H., Capua, Yossi, Hutton, Samuel F., Van Eck, Joyce, Park, Soon Ju, Lippman, Zachary B.

“…Cultivation of crops in urban environments might reduce the environmental impact of food production 1 – 4 . However, lack of available land in cities and a…”
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Variation in the flowering gene SELF PRUNING 5G promotes day-neutrality and early yield in tomato by Soyk, Sebastian, Müller, Niels A, Park, Soon Ju, Schmalenbach, Inga, Jiang, Ke, Hayama, Ryosuke, Zhang, Lei, Van Eck, Joyce, Jiménez-Gómez, José M, Lippman, Zachary B

“…Zachary Lippman, José Jiménez-Gómez and colleagues show that cultivated tomatoes have lost day-length-sensitive flowering, compared to their wild relatives, as…”
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Extreme restructuring of cis-regulatory regions controlling a deeply conserved plant stem cell regulator by Ciren, Danielle, Zebell, Sophia, Lippman, Zachary B

“…A striking paradox is that genes with conserved protein sequence, function and expression pattern over deep time often exhibit extremely divergent…”
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Optimization of crop productivity in tomato using induced mutations in the florigen pathway by Park, Soon Ju, Jiang, Ke, Tal, Lior, Yichie, Yoav, Gar, Oron, Zamir, Dani, Eshed, Yuval, Lippman, Zachary B

“…Zachary Lippman and colleagues report the recovery in tomato of novel, chemically induced alleles in the SFT (florigen) gene and a newly identified suppressor…”
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A cascade of arabinosyltransferases controls shoot meristem size in tomato by Xu, Cao, Liberatore, Katie L, MacAlister, Cora A, Huang, Zejun, Chu, Yi-Hsuan, Jiang, Ke, Brooks, Christopher, Ogawa-Ohnishi, Mari, Xiong, Guangyan, Pauly, Markus, Van Eck, Joyce, Matsubayashi, Yoshikatsu, van der Knaap, Esther, Lippman, Zachary B

“…Zachary Lippman and colleagues report mutations in the tomato ortholog of CLV1 and a gene encoding a hydroxyproline O-arabinosyltransferase enzyme that…”
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Rate of meristem maturation determines inflorescence architecture in tomato by Park, Soon Ju, Jiang, Ke, Schatz, Michael C., Lippman, Zachary B.

“…Flower production and crop yields are highly influenced by the architectures of inflorescences. In the compound inflorescences of tomato and related…”
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Evolution of buffering in a genetic circuit controlling plant stem cell proliferation by Rodriguez-Leal, Daniel, Xu, Cao, Kwon, Choon-Tak, Soyars, Cara, Demesa-Arevalo, Edgar, Man, Jarrett, Liu, Lei, Lemmon, Zachary H., Jones, Daniel S., Van Eck, Joyce, Jackson, David P., Bartlett, Madelaine E., Nimchuk, Zachary L., Lippman, Zachary B.

“…Precise control of plant stem cell proliferation is necessary for the continuous and reproducible development of plant organs 1 , 2 . The peptide ligand…”
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Meristem maturation and inflorescence architecture—lessons from the Solanaceae by Park, Soon Ju, Eshed, Yuval, Lippman, Zachary B

“…•A gradual process of meristem maturation precedes the floral transition.•Reproductive shoot systems—inflorescences—come in continuous forms.•Tomato and…”
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Dissecting cis-regulatory control of quantitative trait variation in a plant stem cell circuit by Wang, Xingang, Aguirre, Lyndsey, Rodríguez-Leal, Daniel, Hendelman, Anat, Benoit, Matthias, Lippman, Zachary B.

“…Cis- regulatory mutations underlie important crop domestication and improvement traits 1 , 2 . However, limited allelic diversity has hindered functional…”
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An integrated view of quantitative trait variation using tomato interspecific introgression lines by Lippman, Zachary B, Semel, Yaniv, Zamir, Dani

“…Resolving natural phenotypic variation into genetic and molecular components is a major objective in biology. Over the past decade, tomato interspecific…”
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Synchronization of the flowering transition by the tomato TERMINATING FLOWER gene by MacAlister, Cora A, Park, Soon Ju, Jiang, Ke, Marcel, Fabien, Bendahmane, Abdelhafid, Izkovich, Yinon, Eshed, Yuval, Lippman, Zachary B

“…Variation in inflorescence architecture in plants affects reproductive success and agricultural yield. Zachary Lippman and colleagues report that the phenotype…”
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Tomato yield heterosis is triggered by a dosage sensitivity of the florigen pathway that fine-tunes shoot architecture by Jiang, Ke, Liberatore, Katie L, Park, Soon Ju, Alvarez, John P, Lippman, Zachary B

“…The superiority of hybrids has long been exploited in agriculture, and although many models explaining "heterosis" have been put forth, direct empirical…”
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The making of a compound inflorescence in tomato and related nightshades by Lippman, Zachary B, Cohen, Oded, Alvarez, John P, Abu-Abied, Mohamad, Pekker, Irena, Paran, Ilan, Eshed, Yuval, Zamir, Dani

“…Variation in the branching of plant inflorescences determines flower number and, consequently, reproductive success and crop yield. Nightshade (Solanaceae)…”
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Hydroxyproline O‐arabinosyltransferase mutants oppositely alter tip growth in Arabidopsis thaliana and Physcomitrella patens by MacAlister, Cora A, Ortiz‐Ramírez, Carlos, Becker, Jörg D, Feijó, José A, Lippman, Zachary B

“…Hydroxyproline O‐arabinosyltransferases (HPATs) are members of a small, deeply conserved family of plant‐specific glycosyltransferases that add arabinose…”
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