Search Results - "Lim, Johan"

Enhanced construction of gene regulatory networks using hub gene information by Yu, Donghyeon, Lim, Johan, Wang, Xinlei, Liang, Faming, Xiao, Guanghua

“…Gene regulatory networks reveal how genes work together to carry out their biological functions. Reconstructions of gene networks from gene expression data…”
Get full text

Estimation of the case fatality rate based on stratification for the COVID-19 outbreak by Kim, Byungwon, Kim, Seonghong, Jang, Woncheol, Jung, Sungkyu, Lim, Johan

“…This work is motivated by the recent worldwide pandemic of the novel coronavirus disease (COVID-19). When an epidemiological disease is prevalent, estimating…”
Get full text

Goodness-of-fit testing for meta-analysis of rare binary events by Zhang, Ming, Xiao, Olivia Y., Lim, Johan, Wang, Xinlei

“…Random-effects (RE) meta-analysis is a crucial approach for combining results from multiple independent studies that exhibit heterogeneity. Recently, two…”
Get full text

Condition-number-regularized covariance estimation by Won, Joong-Ho, Lim, Johan, Kim, Seung-Jean, Rajaratnam, Bala

“…Estimation of high dimensional covariance matrices is known to be a difficult problem, has many applications and is of current interest to the larger…”
Get full text

Efficacy and safety of intravenous and subcutaneous immunoglobulin therapy in idiopathic inflammatory myopathy: A systematic review and meta-analysis by Goswami, Rudra Prosad, Haldar, Soumendra Nath, Chatterjee, Moumita, Vij, Pallavi, van der Kooi, Anneke J., Lim, Johan, Raaphorst, Joost, Bhadu, Danveer, Gelardi, Chiara, Danieli, Maria Giovanna, Kumar, Uma

“…To perform a systematic review and meta-analysis on the efficacy and safety of intravenous (IVIg) and subcutaneous (SCIg) immunoglobulin (Ig) therapy in the…”
Get full text

Metabolic response induced by parasitic plant-fungus interactions hinder amino sugar and nucleotide sugar metabolism in the host by Lee, Dong-Kyu, Ahn, Soohyun, Cho, Hae Yoon, Yun, Hye Young, Park, Jeong Hill, Lim, Johan, Lee, Jeongmi, Kwon, Sung Won

“…Infestation by the biotrophic pathogen Gymnosporangium asiaticum can be devastating for plant of the family Rosaceae. However, the phytopathology of this…”
Get full text

Lipidome profile predictive of disease evolution and activity in rheumatoid arthritis by Koh, Jung Hee, Yoon, Sang Jun, Kim, Mina, Cho, Seonghun, Lim, Johan, Park, Youngjae, Kim, Hyun-Sook, Kwon, Sung Won, Kim, Wan-Uk

“…Lipid mediators are crucial for the pathogenesis of rheumatoid arthritis (RA); however, global analyses have not been undertaken to systematically define the…”
Get full text

Intravenous immunoglobulins as first-line treatment in idiopathic inflammatory myopathies: a pilot study by Lim, Johan, Eftimov, Filip, Verhamme, Camiel, Brusse, Esther, Hoogendijk, Jessica E, Saris, Christiaan G J, Raaphorst, Joost, De Haan, Rob J, van Schaik, Ivo N, Aronica, Eleonora, de Visser, Marianne, van der Kooi, Anneke J

“…Abstract Objectives We explored efficacy and safety of IVIg as first-line treatment in patients with an idiopathic inflammatory myopathy. Methods In this…”
Get full text

High-Throughput Omics and Statistical Learning Integration for the Discovery and Validation of Novel Diagnostic Signatures in Colorectal Cancer by Long, Nguyen Phuoc, Park, Seongoh, Anh, Nguyen Hoang, Nghi, Tran Diem, Yoon, Sang Jun, Park, Jeong Hill, Lim, Johan, Kwon, Sung Won

“…The advancement of bioinformatics and machine learning has facilitated the discovery and validation of omics-based biomarkers. This study employed a novel…”
Get full text

Image Segmentation Using Hidden Markov Gauss Mixture Models by Pyun, K.P., Johan Lim, Chee Sun Won, Gray, R.M.

“…Image segmentation is an important tool in image processing and can serve as an efficient front end to sophisticated algorithms and thereby simplify subsequent…”
Get full text

High-dimensional Markowitz portfolio optimization problem: empirical comparison of covariance matrix estimators by Choi, Young-Geun, Lim, Johan, Choi, Sujung

“…We compare the performance of recently developed regularized covariance matrix estimators for Markowitz's portfolio optimization and of the minimum variance…”
Get full text

Research Quality-Based Multivariate Modeling for Comparison of the Pharmacological Effects of Black and Red Ginseng by Lee, Dong-Kyu, Park, Seongoh, Long, Nguyen Phuoc, Min, Jung Eun, Kim, Hyung Min, Yang, Eugine, Lee, Seul Ji, Lim, Johan, Kwon, Sung Won

“…Black ginseng has various pharmacological activities, but only few studies have compared its pharmacological effects with those of red ginseng. We conducted an…”
Get full text

Determination of coffee origins by integrated metabolomic approach of combining multiple analytical data by Choi, Moon-Young, Choi, Wanseok, Park, Jeong Hill, Lim, Johan, Kwon, Sung Won

“…The flavor and taste of coffee are the most important criteria for evaluating its quality and they are influenced by environmental as well as genetic factors…”
Get full text

TCRβ clones in muscle tissue share structural features in patients with idiopathic inflammatory myopathy and are associated with disease activity by Anang, Dornatien C, Walter, Hannah A W, Lim, Johan, Niewold, Ilse T G, van der Weele, Linda, Aronica, Eleonora, Eftimov, Filip, Raaphorst, Joost, van Schaik, Barbera D C, van Kampen, Antoine H C, van der Kooi, Anneke J, de Vries, Niek

“…To characterize the T cell receptor (TCRβ) repertoire in peripheral blood and muscle tissues of treatment naïve patients with newly diagnosed idiopathic…”
Get full text

Seronegative patients form a distinctive subgroup of immune-mediated necrotizing myopathy by Lim, Johan, Rietveld, Anke, De Bleecker, Jan L, Badrising, Umesh A, Saris, Christiaan G.J, van der Kooi, Anneke J, de Visser, Marianne

“…OBJECTIVESTo investigate the characteristics of different clinico-serologic subgroups of immune-mediated necrotizing myopathy (IMNM). METHODSWe retrospectively…”
Get full text

Classification of spectral data using fused lasso logistic regression by Yu, Donghyeon, Lee, Seul Ji, Lee, Won Jun, Kim, Sang Cheol, Lim, Johan, Kwon, Sung Won

Get full text

Meta-Analysis of Tumor Stem-Like Breast Cancer Cells Using Gene Set and Network Analysis by Lee, Won Jun, Kim, Sang Cheol, Yoon, Jung-Ho, Yoon, Sang Jun, Lim, Johan, Kim, You-Sun, Kwon, Sung Won, Park, Jeong Hill

“…Generally, cancer stem cells have epithelial-to-mesenchymal-transition characteristics and other aggressive properties that cause metastasis. However, there…”
Get full text

Application of fused lasso logistic regression to the study of corpus callosum thickness in early Alzheimer's disease by Lee, Sang H., Yu, Donghyeon, Bachman, Alvin H., Lim, Johan, Ardekani, Babak A.

“…•Development of an algorithm for fused lasso logistic regression (FLLR) model.•We applied FLLR to classify Alzheimer disease (AD) subjects from normal…”
Get full text

Metabolic and Cardiovascular Benefits of Apple and Apple-Derived Products: A Systematic Review and Meta-Analysis of Randomized Controlled Trials by Kim, Sun Jo, Anh, Nguyen Hoang, Jung, Cheol Woon, Long, Nguyen Phuoc, Park, Seongoh, Cho, Young Hyun, Yoon, Young Cheol, Lee, Eun Goo, Kim, Mina, Son, Eui Young, Kim, Tae Ha, Deng, Yingqian, Lim, Johan, Kwon, Sung Won

“…Quantitative evidence of the metabolic and cardiovascular effects of apples ( ) is lacking in interventional studies. This study aimed to summarize the…”
Get full text

Frequencies and clinical associations of myositis-related antibodies in The Netherlands: A one-year survey of all Dutch patients by Platteel, Anouk C.M., Wevers, Brigitte A., Lim, Johan, Bakker, Jaap A., Bontkes, Hetty J., Curvers, Joyce, Damoiseaux, Jan, Heron, Michiel, de Kort, Gijs, Limper, Maarten, van Lochem, Ellen G., Mulder, A.H. Leontine, Saris, Christiaan G.J., van der Valk, Hester, van der Kooi, Anneke J., van Leeuwen, Ester M.M., Veltkamp, Marcel, Schreurs, Marco W.J., Meek, Bob, Hamann, Dörte

“…Idiopathic inflammatory myopathies (IIM) are a heterogeneous group of connective tissue diseases, collectively known as myositis. Diagnosis of IIM is…”
Get full text