Search Results - "Li, PingHua"

3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments by Dong, Pengfei, Tu, Xiaoyu, Chu, Po-Yu, Lü, Peitao, Zhu, Ning, Grierson, Donald, Du, Baijuan, Li, Pinghua, Zhong, Silin

“…The spatial organization of the genome plays an important role in the regulation of gene expression. How- ever, the core structural features of animal genomes,…”
Get full text

Genome-wide analysis of the basic Helix-Loop-Helix (bHLH) transcription factor family in maize by Zhang, Tingting, Lv, Wei, Zhang, Haisen, Ma, Lin, Li, Pinghua, Ge, Lei, Li, Gang

“…In plants, the basic helix-loop-helix (bHLH) transcription factors play key roles in diverse biological processes. Genome-wide comprehensive and systematic…”
Get full text

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors by Tu, Xiaoyu, Mejía-Guerra, María Katherine, Valdes Franco, Jose A., Tzeng, David, Chu, Po-Yu, Shen, Wei, Wei, Yingying, Dai, Xiuru, Li, Pinghua, Buckler, Edward S., Zhong, Silin

“…The transcription regulatory network inside a eukaryotic cell is defined by the combinatorial actions of transcription factors (TFs). However, TF binding…”
Get full text

Model-based clustering for RNA-seq data by Si, Yaqing, Liu, Peng, Li, Pinghua, Brutnell, Thomas P

“…RNA-seq technology has been widely adopted as an attractive alternative to microarray-based methods to study global gene expression. However, robust…”
Get full text

Ribosomal Protein L13 Promotes IRES-Driven Translation of Foot-and-Mouth Disease Virus in a Helicase DDX3-Dependent Manner by Han, Shichong, Sun, Shiqi, Li, Pinghua, Liu, Qun, Zhang, Zhihui, Dong, Hu, Sun, Mengmeng, Wu, Wenxue, Wang, Xiaojia, Guo, Huichen

“…Internal ribosome entry site (IRES)-driven translation is a common strategy among positive-sense, single-stranded RNA viruses for bypassing the host cell…”
Get full text

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet by Shi, Junpeng, Ma, Xuxu, Zhang, Jihong, Zhou, Yingsi, Liu, Minxuan, Huang, Liangliang, Sun, Silong, Zhang, Xiangbo, Gao, Xiang, Zhan, Wei, Li, Pinghua, Wang, Lun, Lu, Ping, Zhao, Haiming, Song, Weibin, Lai, Jinsheng

“…Broomcorn millet ( Panicum miliaceum L.) has strong tolerance to abiotic stresses, and is probably one of the oldest crops, with its earliest cultivation that…”
Get full text

Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains by Dong, Pengfei, Tu, Xiaoyu, Li, Haoxuan, Zhang, Jianhua, Grierson, Donald, Li, Pinghua, Zhong, Silin

“…Chromatins are not randomly packaged in the nucleus and their organization plays important roles in transcription regulation, which is best studied in the…”
Get full text

The developmental dynamics of the maize leaf transcriptome by Brutnell, Thomas P, Li, Pinghua, Ponnala, Lalit, Gandotra, Neeru, Wang, Lin, Si, Yaqing, Tausta, S Lori, Kebrom, Tesfamichael H, Provart, Nicholas, Patel, Rohan, Myers, Christopher R, Reidel, Edwin J, Turgeon, Robert, Liu, Peng, Sun, Qi, Nelson, Timothy

“…Thomas Brutnell and colleagues report RNA-Seq analysis of the maize leaf transcriptome during stages of leaf development. They identify dynamic changes in gene…”
Get full text

Design and optimization of a runway resonator sensor based on BP-NSGA II for anaemic disease by Luoxuan, Zhang, Pinghua, Li, Jinghao, Liu, Xuye, Zhuang

“…Optical resonators are particularly suitable for anaemia state detection due to small sample size, real-time detection and low power consumption. However, the…”
Get full text

Reference genome sequence of the model plant Setaria by Bennetzen, Jeffrey L, Schmutz, Jeremy, Wang, Hao, Percifield, Ryan, Hawkins, Jennifer, Pontaroli, Ana C, Estep, Matt, Feng, Liang, Vaughn, Justin N, Grimwood, Jane, Jenkins, Jerry, Barry, Kerrie, Lindquist, Erika, Hellsten, Uffe, Deshpande, Shweta, Wang, Xuewen, Wu, Xiaomei, Mitros, Therese, Triplett, Jimmy, Yang, Xiaohan, Ye, Chu-Yu, Mauro-Herrera, Margarita, Wang, Lin, Li, Pinghua, Sharma, Manoj, Sharma, Rita, Ronald, Pamela C, Panaud, Olivier, Kellogg, Elizabeth A, Brutnell, Thomas P, Doust, Andrew N, Tuskan, Gerald A, Rokhsar, Daniel, Devos, Katrien M

“…Completion of genome sequences for the diploid Setaria italica reveals features of C 4 photosynthesis that could enable improvement of the polyploid biofuel…”
Get full text

PGD: a machine learning-based photosynthetic-related gene detection approach by Wang, Yunchuan, Dai, Xiuru, Fu, Daohong, Li, Pinghua, Du, Baijuan

“…The primary determinant of crop yield is photosynthetic capacity, which is under the control of photosynthesis-related genes. Therefore, the mining of genes…”
Get full text

Comparative Proteomics of Thellungiella halophila Leaves from Plants Subjected to Salinity Reveals the Importance of Chloroplastic Starch and Soluble Sugars in Halophyte Salt Tolerance by Wang, Xuchu, Chang, Lili, Wang, Baichen, Wang, Dan, Li, Pinghua, Wang, Limin, Yi, Xiaoping, Huang, Qixing, Peng, Ming, Guo, Anping

“…Thellungiella halophila, a close relative of Arabidopsis, is a model halophyte used to study plant salt tolerance. The proteomic/physiological/transcriptomic…”
Get full text

Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response by Ma, Shisong, Ding, Zehong, Li, Pinghua

“…The advent of big data in biology offers opportunities while poses challenges to derive biological insights. For maize, a large amount of publicly available…”
Get full text

Characteristics of Gut Microbiota in Sows and Their Relationship with Apparent Nutrient Digestibility by Niu, Qing, Li, Pinghua, Hao, Shuaishuai, Kim, Sung Woo, Du, Taoran, Hua, Jindi, Huang, Ruihua

“…The gut microbiota plays important roles in animal health and nutrient digestibility. The characteristics of gut microbiota population in grower pigs and their…”
Get full text

Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence by Tu, Xiaoyu, Ren, Sibo, Shen, Wei, Li, Jianjian, Li, Yuxiang, Li, Chuanshun, Li, Yangmeihui, Zong, Zhanxiang, Xie, Weibo, Grierson, Donald, Fei, Zhangjun, Giovannoni, Jim, Li, Pinghua, Zhong, Silin

“…Non-coding cis -regulatory variants in animal genomes are an important driving force in the evolution of transcription regulation and phenotype diversity…”
Get full text

Accelerated remodeling of the mesophyll-bundle sheath interface in the maize C4 cycle mutant leaves by Gao, Peng, Wang, Pengfei, Du, Baijuan, Li, Pinghua, Kang, Byung-Ho

“…C4 photosynthesis in the maize leaf involves the exchange of organic acids between mesophyll (M) and the bundle sheath (BS) cells. The transport is mediated by…”
Get full text

Introgression of pigs in Taihu Lake region possibly contributed to the improvement of fertility in Danish Large White pigs by Liu, Chenxi, Huang, Ruihua, Su, Guosheng, Hou, Liming, Zhou, Wuduo, Liu, Qian, Qiu, Zijian, Zhao, Qingbo, Li, Pinghua

“…Eurasian pigs have undergone lineage admixture throughout history. It has been confirmed that the genes of indigenous pig breeds in China have been introduced…”
Get full text

Single-Cell RNA Sequencing Reveals the Cellular Landscape of Longissimus Dorsi in a Newborn Suhuai Pig by Xiao, Wei, Jiang, Nengjing, Ji, Zhengyu, Ni, Mengru, Zhang, Zhaobo, Zhao, Qingbo, Huang, Ruihua, Li, Pinghua, Hou, Liming

“…The introduction of single-cell RNA sequencing (scRNA-seq) technology has spurred additional advancements in analyzing the cellular composition of tissues. The…”
Get full text

Adding Appropriate Fiber in Diet Increases Diversity and Metabolic Capacity of Distal Gut Microbiota Without Altering Fiber Digestibility and Growth Rate of Finishing Pig by Pu, Guang, Li, Pinghua, Du, Taoran, Niu, Qing, Fan, Lijuan, Wang, Huan, Liu, Hang, Li, Kaijun, Niu, Peipei, Wu, Chengwu, Zhou, Wuduo, Huang, Ruihua

“…The digestion ability of pigs to dietary fiber is derived from their intestinal microbiota, especially hindgut microbiota. However, tolerance of pigs to high…”
Get full text

Effects of short-term feeding with high fiber diets on growth, utilization of dietary fiber, and microbiota in pigs by Pu, Guang, Hou, Liming, Du, Taoran, Wang, Binbin, Liu, Hang, Li, Kaijun, Niu, Peipei, Zhou, Wuduo, Huang, Ruihua, Li, Pinghua

“…Finishing pigs can adapt to high-fiber diet smoothly according to the production performance and their intestinal microbiota through a 28-day trial or longer…”
Get full text