Search Results - "Li, Billy"

RADAR: a rigorously annotated database of A-to-I RNA editing by Ramaswami, Gokul, Li, Jin Billy

“…We present RADAR--a rigorously annotated database of A-to-I RNA editing (available at http://RNAedit.com). The identification of A-to-I RNA editing sites has…”
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Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing by Li, Jin Billy, Levanon, Erez Y., Yoon, Jung-Ki, Aach, John, Xie, Bin, LeProust, Emily, Zhang, Kun, Gao, Yuan, Church, George M.

“…Adenosine-to-inosine (A-to-I) RNA editing leads to transcriptome diversity and is important for normal brain function. To date, only a handful of functional…”
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The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers by Han, Leng, Diao, Lixia, Yu, Shuangxing, Xu, Xiaoyan, Li, Jie, Zhang, Rui, Yang, Yang, Werner, Henrica M.J., Eterovic, A. Karina, Yuan, Yuan, Li, Jun, Nair, Nikitha, Minelli, Rosalba, Tsang, Yiu Huen, Cheung, Lydia W.T., Jeong, Kang Jin, Roszik, Jason, Ju, Zhenlin, Woodman, Scott E., Lu, Yiling, Scott, Kenneth L., Li, Jin Billy, Mills, Gordon B., Liang, Han

“…Adenosine-to-inosine (A-to-I) RNA editing is a widespread post-transcriptional mechanism, but its genomic landscape and clinical relevance in cancer have not…”
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Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs by Walkley, Carl R, Li, Jin Billy

“…One of the most prevalent forms of post-transcritpional RNA modification is the conversion of adenosine nucleosides to inosine (A-to-I), mediated by the ADAR…”
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Enhanced Specificity and Efficiency of the CRISPR/Cas9 System with Optimized sgRNA Parameters in Drosophila by Ren, Xingjie, Yang, Zhihao, Xu, Jiang, Sun, Jin, Mao, Decai, Hu, Yanhui, Yang, Su-Juan, Qiao, Huan-Huan, Wang, Xia, Hu, Qun, Deng, Patricia, Liu, Lu-Ping, Ji, Jun-Yuan, Li, Jin Billy, Ni, Jian-Quan

“…The CRISPR/Cas9 system has recently emerged as a powerful tool for functional genomic studies in Drosophila melanogaster. However, single-guide RNA (sgRNA)…”
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Multifaceted roles of RNA editing enzyme ADAR1 in innate immunity by Jarmoskaite, Inga, Li, Jin Billy

“…Innate immunity must be tightly regulated to enable sensitive pathogen detection while averting autoimmunity triggered by pathogen-like host molecules. A…”
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Adar RNA editing-dependent and -independent effects are required for brain and innate immune functions in Drosophila by Deng, Patricia, Khan, Anzer, Jacobson, Dionna, Sambrani, Nagraj, McGurk, Leeanne, Li, Xianghua, Jayasree, Aswathy, Hejatko, Jan, Shohat-Ophir, Galit, O’Connell, Mary A., Li, Jin Billy, Keegan, Liam P.

“…ADAR RNA editing enzymes are high-affinity dsRNA-binding proteins that deaminate adenosines to inosines in pre-mRNA hairpins and also exert editing-independent…”
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Identification of phagocytosis regulators using magnetic genome-wide CRISPR screens by Haney, Michael S., Bohlen, Christopher J., Morgens, David W., Ousey, James A., Barkal, Amira A., Tsui, C. Kimberly, Ego, Braeden K., Levin, Roni, Kamber, Roarke A., Collins, Hannah, Tucker, Andrew, Li, Amy, Vorselen, Daan, Labitigan, Lorenzo, Crane, Emily, Boyle, Evan, Jiang, Lihua, Chan, Joanne, Rincón, Esther, Greenleaf, William J., Li, Billy, Snyder, Michael P., Weissman, Irving L., Theriot, Julie A., Collins, Sean R., Barres, Ben A., Bassik, Michael C.

“…Phagocytosis is required for a broad range of physiological functions, from pathogen defense to tissue homeostasis, but the mechanisms required for…”
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Identification of human RNA editing sites: A historical perspective by Ramaswami, Gokul, Li, Jin Billy

“…•Historical review of methods to identify A-to-I RNA editing sites.•Our ability to identify editing sites is heavily dependent on the DNA sequencing…”
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Using Kinect for face recognition under varying poses, expressions, illumination and disguise by Li, B. Y. L., Mian, A. S., Wanquan Liu, Krishna, A.

“…We present an algorithm that uses a low resolution 3D sensor for robust face recognition under challenging conditions. A preprocessing algorithm is proposed…”
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Learning cis-regulatory principles of ADAR-based RNA editing from CRISPR-mediated mutagenesis by Liu, Xin, Sun, Tao, Shcherbina, Anna, Li, Qin, Jarmoskaite, Inga, Kappel, Kalli, Ramaswami, Gokul, Das, Rhiju, Kundaje, Anshul, Li, Jin Billy

“…Adenosine-to-inosine (A-to-I) RNA editing catalyzed by ADAR enzymes occurs in double-stranded RNAs. Despite a compelling need towards predictive understanding…”
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Robust RGB-D face recognition using Kinect sensor by Li, Billy Y.L., Xue, Mingliang, Mian, Ajmal, Liu, Wanquan, Krishna, Aneesh

“…In this paper we propose a robust face recognition algorithm for low resolution RGB-D Kinect data. Many techniques are proposed for image preprocessing due to…”
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Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs by Vogel, Paul, Moschref, Matin, Li, Qin, Merkle, Tobias, Selvasaravanan, Karthika D., Li, Jin Billy, Stafforst, Thorsten

“…Molecular tools that target RNA at specific sites allow recoding of RNA information and processing. SNAP-tagged deaminases guided by a chemically stabilized…”
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Deciphering the functions and regulation of brain-enriched A-to-I RNA editing by Li, Jin Billy, Church, George M

“…Brain enriched RNA editing of Adenosine-to-Inosine (A-to-I) increases the amount of information encoded in the genome and diversifies the transcriptome. Here…”
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RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself by Liddicoat, Brian J., Piskol, Robert, Chalk, Alistair M., Ramaswami, Gokul, Higuchi, Miyoko, Hartner, Jochen C., Li, Jin Billy, Seeburg, Peter H., Walkley, Carl R.

“…Adenosine-to-inosine (A-to-I) editing is a highly prevalent posttranscriptional modification of RNA, mediated by ADAR (adenosine deaminase acting on RNA)…”
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Accurate identification of human Alu and non-Alu RNA editing sites by Ramaswami, Gokul, Lin, Wei, Piskol, Robert, Tan, Meng How, Davis, Carrie, Li, Jin Billy

“…A computational framework is reported for the accurate and sensitive identification of RNA editing sites from whole-genome DNA and RNA sequences from the same…”
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Assessing the Impact of Population Dynamics on Poverty Measures: A Decomposition Analysis by Yip, Paul S. F., Wong, Jacky H. K., Li, Billy Y. G., Zhang, Yi, Kwok, Chi Leung, Chen, Meng Ni

“…Reducing income inequality is one of the seventeen Sustainable Development Goals recently announced by United Nations. A relative poverty concept adopted by…”
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Editing of Cellular Self-RNAs by Adenosine Deaminase ADAR1 Suppresses Innate Immune Stress Responses by George, Cyril X., Ramaswami, Gokul, Li, Jin Billy, Samuel, Charles E.

“…Adenosine deaminases acting on double-stranded RNA (ADARs) catalyze the deamination of adenosine (A) to produce inosine (I) in double-stranded (ds) RNA…”
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Face recognition based on Kinect by Li, Billy Y. L., Mian, Ajmal S., Liu, Wanquan, Krishna, Aneesh

“…In this paper, we present a new algorithm that utilizes low-quality red, green, blue and depth (RGB-D) data from the Kinect sensor for face recognition under…”
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The evolution and adaptation of A-to-I RNA editing by Yablonovitch, Arielle L, Deng, Patricia, Jacobson, Dionna, Li, Jin Billy

“…Adenosine-to-inosine (A-to-I) RNA editing is an important post-transcriptional modification that affects the information encoded from DNA to RNA to protein…”
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