Search Results - "Levi, Kyle"

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome by Boling, Lance, Cuevas, Daniel A., Grasis, Juris A., Kang, Han Suh, Knowles, Ben, Levi, Kyle, Maughan, Heather, McNair, Katelyn, Rojas, Maria Isabel, Sanchez, Savannah E., Smurthwaite, Cameron, Rohwer, Forest

“…The approximately 10 11 viruses and microbial cells per gram of fecal matter (dry weight) in the large intestine are important to human health. The responses…”
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A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage by Benler, Sean, Cobián-Güemes, Ana Georgina, McNair, Katelyn, Hung, Shr-Hau, Levi, Kyle, Edwards, Rob, Rohwer, Forest

“…Diversity-generating retroelements (DGRs) are genetic cassettes that selectively mutate target genes to produce hypervariable proteins. First characterized in…”
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Cardiac autonomic modulation impairments in advanced breast cancer patients by Arab, Claudia, Vanderlei, Luiz Carlos Marques, da Silva Paiva, Laércio, Fulghum, Kyle Levi, Fristachi, Carlos Elias, Nazario, Afonso Celso Pinto, Elias, Simone, Gebrim, Luiz Henrique, Ferreira Filho, Celso, Gidron, Yori, Ferreira, Celso

“…Aim To compare cardiac autonomic modulation in early- versus advanced-stage breast cancer patients before any type of cancer treatment and investigate…”
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A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes by Rojas, Maria I., Cavalcanti, Giselle S., McNair, Katelyn, Benler, Sean, Alker, Amanda T., Cobián-Güemes, Ana G., Giluso, Melissa, Levi, Kyle, Rohwer, Forest, Bailey, Barbara A., Beyhan, Sinem, Edwards, Robert A., Shikuma, Nicholas J.

“…To engage with host cells, diverse pathogenic bacteria produce syringe-like structures called contractile injection systems (CIS). CIS are evolutionarily…”
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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage by Edwards, Robert A., Vega, Alejandro A., Norman, Holly M., Cinek, Ondrej, Aziz, Ramy K., McNair, Katelyn, Barr, Jeremy J., Brouns, Stan J. J., Cazares, Adrian, de Jonge, Patrick A., Díaz Muñoz, Samuel L., Kurilshikov, Alexander, Lavigne, Rob, Mazankova, Karla, McCarthy, David T., Nobrega, Franklin L., Reyes Muñoz, Alejandro, Tapia, German, Trefault, Nicole, Tyakht, Alexander V., Vinuesa, Pablo, Wagemans, Jeroen, Aarestrup, Frank M., Ahmadov, Gunduz, Alassaf, Abeer, Anton, Josefa, Asangba, Abigail, Billings, Emma K., Cantu, Vito Adrian, Carlton, Jane M., Cazares, Daniel, Cho, Gyu-Sung, Condeff, Tess, Cortés, Pilar, Cranfield, Mike, Cuevas, Daniel A., De la Iglesia, Rodrigo, Decewicz, Przemyslaw, Doane, Michael P., Dominy, Nathaniel J., Dziewit, Lukasz, Elwasila, Bashir Mukhtar, Eren, A. Murat, Franz, Charles, Fu, Jingyuan, Garcia-Aljaro, Cristina, Ghedin, Elodie, Haggerty, John M., Head, Steven R., Hill, Colin, Hyöty, Heikki, Ilina, Elena N., Irwin, Mitchell T., Jeffries, Thomas C., Jofre, Juan, Junge, Randall E., Kelley, Scott T., Khan Mirzaei, Mohammadali, Kowalewski, Martin, Kumaresan, Deepak, Leigh, Steven R., Lisitsyna, Eugenia S., Llagostera, Montserrat, Maritz, Julia M., Marr, Linsey C., McCann, Angela, Molshanski-Mor, Shahar, Monteiro, Silvia, Moreira-Grez, Benjamin, Morris, Megan, Mugisha, Lawrence, Muniesa, Maite, Neve, Horst, Nguyen, Nam-phuong, Nigro, Olivia D., Nilsson, Anders S., O’Connell, Taylor, Oliver, Andrew, Piuri, Mariana, Qimron, Udi, Quan, Zhe-Xue, Rainetova, Petra, Raya, Raul, Rice, Gillian A. O., Rossi, Alessandro, Santos, Ricardo, Shimashita, John, Stachler, Elyse N., Stene, Lars C., Strain, Ronan, Torres, Pedro J., Twaddle, Alan, Ugochi Ibekwe, MaryAnn, Villagra, Nicolás, Wandro, Stephen, White, Bryan, Whiteley, Andy, Wijmenga, Cisca, Zschach, Henrike, Dutilh, Bas E.

“…Microbiomes are vast communities of microorganisms and viruses that populate all natural ecosystems. Viruses have been considered to be the most variable…”
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Bam Scripts: Tools for Retrieving Data from the Sequence Read Archive and Analysis with Read Mapping by Levi, Kyle Michael

“…The Sequence Read Archive is the world’s largest collection of raw DNA sequencing data and while it provides an adequate online search functionality for…”
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NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements by Connor, Ryan, Brister, Rodney, Buchmann, Jan P, Deboutte, Ward, Edwards, Rob, Martí-Carreras, Joan, Tisza, Mike, Zalunin, Vadim, Andrade-Martínez, Juan, Cantu, Adrian, D'Amour, Michael, Efremov, Alexandre, Fleischmann, Lydia, Forero-Junco, Laura, Garmaeva, Sanzhima, Giluso, Melissa, Glickman, Cody, Henderson, Margaret, Kellman, Benjamin, Kristensen, David, Leubsdorf, Carl, Levi, Kyle, Levi, Shane, Pakala, Suman, Peddu, Vikas, Ponsero, Alise, Ribeiro, Eldred, Roy, Farrah, Rutter, Lindsay, Saha, Surya, Shakya, Migun, Shean, Ryan, Miller, Matthew, Tully, Benjamin, Turkington, Christopher, Youens-Clark, Ken, Vanmechelen, Bert, Busby, Ben

“…A wealth of viral data sits untapped in publicly available metagenomic data sets when it might be extracted to create a usable index for the virological…”
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Mitochondrial recovery from shotgun metagenome sequencing enabling phylogenetic analysis of the common thresher shark (Alopias vulpinus) by Doane, Michael P., Kacev, Dovi, Harrington, Sean, Levi, Kyle, Pande, Dnyanada, Vega, Alejandro, Dinsdale, Elizabeth A.

“…The common thresher shark (Alopias vulpinus) is an important fisheries species in the northeastern Pacific Ocean along California, USA and Mexico; yet genetic…”
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