Search Results - "Lespinet, Olivier"

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation by Lioy, Virginia S., Lorenzi, Jean-Noël, Najah, Soumaya, Poinsignon, Thibault, Leh, Hervé, Saulnier, Corinne, Aigle, Bertrand, Lautru, Sylvie, Thibessard, Annabelle, Lespinet, Olivier, Leblond, Pierre, Jaszczyszyn, Yan, Gorrichon, Kevin, Varoquaux, Nelle, Junier, Ivan, Boccard, Frédéric, Pernodet, Jean-Luc, Bury-Moné, Stéphanie

“…Bacteria of the genus Streptomyces are prolific producers of specialized metabolites, including antibiotics. The linear chromosome includes a central region…”
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Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi by Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C., Garrido-Oter, Ruben, Thon, Michael R., Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, Ver Loren van Themaat, Emiel, Kemen, Eric, McHardy, Alice C., Schulze-Lefert, Paul, O’Connell, Richard J.

“…The sessile nature of plants forced them to evolve mechanisms to prioritize their responses to simultaneous stresses, including colonization by microbes or…”
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On the predictibility of A-minor motifs from their local contexts by Gianfrotta, Coline, Reinharz, Vladimir, Lespinet, Olivier, Barth, Dominique, Denise, Alain

“…This study investigates the importance of the structural context in the formation of a type I/II A-minor motif. This very frequent structural motif has been…”
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The ribosome profiling landscape of yeast reveals a high diversity in pervasive translation by Papadopoulos, Chris, Arbes, Hugo, Cornu, David, Chevrollier, Nicolas, Blanchet, Sandra, Roginski, Paul, Rabier, Camille, Atia, Safiya, Lespinet, Olivier, Namy, Olivier, Lopes, Anne

“…Pervasive translation is a widespread phenomenon that plays a critical role in the emergence of novel microproteins, but the diversity of translation patterns…”
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Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters by Dallery, Jean-Félix, Lapalu, Nicolas, Zampounis, Antonios, Pigné, Sandrine, Luyten, Isabelle, Amselem, Joëlle, Wittenberg, Alexander H J, Zhou, Shiguo, de Queiroz, Marisa V, Robin, Guillaume P, Auger, Annie, Hainaut, Matthieu, Henrissat, Bernard, Kim, Ki-Tae, Lee, Yong-Hwan, Lespinet, Olivier, Schwartz, David C, Thon, Michael R, O'Connell, Richard J

“…The ascomycete fungus Colletotrichum higginsianum causes anthracnose disease of brassica crops and the model plant Arabidopsis thaliana. Previous versions of…”
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Comparative genomics of emerging pathogens in the Candida glabrata clade by Gabaldón, Toni, Martin, Tiphaine, Marcet-Houben, Marina, Durrens, Pascal, Bolotin-Fukuhara, Monique, Lespinet, Olivier, Arnaise, Sylvie, Boisnard, Stéphanie, Aguileta, Gabriela, Atanasova, Ralitsa, Bouchier, Christiane, Couloux, Arnaud, Creno, Sophie, Almeida Cruz, Jose, Devillers, Hugo, Enache-Angoulvant, Adela, Guitard, Juliette, Jaouen, Laure, Ma, Laurence, Marck, Christian, Neuvéglise, Cécile, Pelletier, Eric, Pinard, Amélie, Poulain, Julie, Recoquillay, Julien, Westhof, Eric, Wincker, Patrick, Dujon, Bernard, Hennequin, Christophe, Fairhead, Cécile

“…Candida glabrata follows C. albicans as the second or third most prevalent cause of candidemia worldwide. These two pathogenic yeasts are distantly related, C…”
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CusProSe: a customizable protein annotation software with an application to the prediction of fungal secondary metabolism genes by Oliveira, Leonor, Chevrollier, Nicolas, Dallery, Jean-Felix, O’Connell, Richard J., Lebrun, Marc-Henri, Viaud, Muriel, Lespinet, Olivier

“…We report here a new application, CustomProteinSearch (CusProSe), whose purpose is to help users to search for proteins of interest based on their domain…”
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FUNGIpath: a tool to assess fungal metabolic pathways predicted by orthology by Grossetête, Sandrine, Labedan, Bernard, Lespinet, Olivier

“…More and more completely sequenced fungal genomes are becoming available and many more sequencing projects are in progress. This deluge of data should improve…”
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The role of lineage-specific gene family expansion in the evolution of eukaryotes by Lespinet, Olivier, Wolf, Yuri I, Koonin, Eugene V, Aravind, L

“…A computational procedure was developed for systematic detection of lineage-specific expansions (LSEs) of protein families in sequenced genomes and applied to…”
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Comparative Genomics among Closely Related Streptomyces Strains Revealed Specialized Metabolite Biosynthetic Gene Cluster Diversity by Vicente, Cláudia M, Thibessard, Annabelle, Lorenzi, Jean-Noël, Benhadj, Mabrouka, Hôtel, Laurence, Gacemi-Kirane, Djamila, Lespinet, Olivier, Leblond, Pierre, Aigle, Bertrand

“…Specialized metabolites are of great interest due to their possible industrial and clinical applications. The increasing number of antimicrobial resistant…”
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ORENZA: a web resource for studying ORphan ENZyme activities by Lespinet, Olivier, Labedan, Bernard

“…Despite the current availability of several hundreds of thousands of amino acid sequences, more than 36% of the enzyme activities (EC numbers) defined by the…”
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The New Animal Phylogeny: Reliability and Implications by Adoutte, Andre, Balavoine, Guillaume, Lartillot, Nicolas, Lespinet, Olivier, Benjamin Prud'homme, De Rosa, Renaud

“…DNA sequence analysis dictates new interpretation of phylogenic trees. Taxa that were once thought to represent successive grades of complexity at the base of…”
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Assessment of phylogenetic diversity of bacterial microflora in drinking water using serial analysis of ribosomal sequence tags by Poitelon, Jean-Baptiste, Joyeux, Michel, Welté, Bénédicte, Duguet, Jean-Pierre, Prestel, Eric, Lespinet, Olivier, DuBow, Michael S.

“…We examined chlorinated drinking water samples from three different surface water treatment plants for bacterial 16S rDNA diversity using the serial analysis…”
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Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data by Lemoine, Frédéric, Lespinet, Olivier, Labedan, Bernard

“…Comparison of completely sequenced microbial genomes has revealed how fluid these genomes are. Detecting synteny blocks requires reliable methods to…”
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Erratum: Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi by Hacquard, Stéphane, Kracher, Barbara, Hiruma, Kei, Münch, Philipp C., Garrido-Oter, Ruben, Thon, Michael R., Weimann, Aaron, Damm, Ulrike, Dallery, Jean-Félix, Hainaut, Matthieu, Henrissat, Bernard, Lespinet, Olivier, Sacristán, Soledad, van Themaat, Emiel Ver Loren, Kemen, Eric, McHardy, Alice C., Schulze-Lefert, Paul, O’Connell, Richard J.

“…Nature Communications 7 Article number:11362 (2016); Published 6 May 2016; Updated 29 September 2016. The HTML version of this Article previously published…”
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The genome sequence of the model ascomycete fungus Podospora anserina by Espagne, Eric, Lespinet, Olivier, Malagnac, Fabienne, Da Silva, Corinne, Jaillon, Olivier, Porcel, Betina M, Couloux, Arnaud, Aury, Jean-Marc, Ségurens, Béatrice, Poulain, Julie, Anthouard, Véronique, Grossetete, Sandrine, Khalili, Hamid, Coppin, Evelyne, Déquard-Chablat, Michelle, Picard, Marguerite, Contamine, Véronique, Arnaise, Sylvie, Bourdais, Anne, Berteaux-Lecellier, Véronique, Gautheret, Daniel, de Vries, Ronald P, Battaglia, Evy, Coutinho, Pedro M, Danchin, Etienne Gj, Henrissat, Bernard, Khoury, Riyad El, Sainsard-Chanet, Annie, Boivin, Antoine, Pinan-Lucarré, Bérangère, Sellem, Carole H, Debuchy, Robert, Wincker, Patrick, Weissenbach, Jean, Silar, Philippe

“…The dung-inhabiting ascomycete fungus Podospora anserina is a model used to study various aspects of eukaryotic and fungal biology, such as ageing, prions and…”
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SynteBase/SynteView: a tool to visualize gene order conservation in prokaryotic genomes by Lemoine, Frédéric, Labedan, Bernard, Lespinet, Olivier

“…It has been repeatedly observed that gene order is rapidly lost in prokaryotic genomes. However, persistent synteny blocks are found when comparing more or…”
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Expression pattern of Brachyury in the mollusc Patella vulgata suggests a conserved role in the establishment of the AP axis in Bilateria by Lartillot, Nicolas, Lespinet, Olivier, Vervoort, Michel, Adoutte, André

“…We report the characterisation of a Brachyury ortholog ( PvuBra ) in the marine gastropod Patella vulgata . In this mollusc, the embryo displays an equal…”
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A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina by Bidard, Frédérique, Imbeaud, Sandrine, Reymond, Nancie, Lespinet, Olivier, Silar, Philippe, Clavé, Corinne, Delacroix, Hervé, Berteaux-Lecellier, Véronique, Debuchy, Robert

“…The development of new microarray technologies makes custom long oligonucleotide arrays affordable for many experimental applications, notably gene expression…”
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Intergenic ORFs as elementary structural modules of de novo gene birth and protein evolution by Papadopoulos, Chris, Callebaut, Isabelle, Gelly, Jean-Christophe, Hatin, Isabelle, Namy, Olivier, Renard, Maxime, Lespinet, Olivier, Lopes, Anne

“…The noncoding genome plays an important role in de novo gene birth and in the emergence of genetic novelty. Nevertheless, how noncoding sequences' properties…”
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