Search Results - "Lelimousin, Mickael"
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Structure-guided evolution of cyan fluorescent proteins towards a quantum yield of 93
Published in Nature communications (20-03-2012)“…Cyan variants of green fluorescent protein are widely used as donors in Förster resonance energy transfer experiments. The popular, but modestly bright,…”
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The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins
Published in ACS chemical biology (15-07-2016)“…Histo-blood group epitopes are fucosylated branched oligosaccharides with well-defined conformations in solution that are recognized by receptors, such as…”
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3
Intrinsic Dynamics in ECFP and Cerulean Control Fluorescence Quantum Yield
Published in Biochemistry (Easton) (27-10-2009)“…Enhanced cyan fluorescent protein (ECFP) and its variant Cerulean are genetically encoded fluorophores widely used as donors in FRET-based cell imaging…”
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Conformational Changes in the Epidermal Growth Factor Receptor: Role of the Transmembrane Domain Investigated by Coarse-Grained MetaDynamics Free Energy Calculations
Published in Journal of the American Chemical Society (24-08-2016)“…The epidermal growth factor receptor (EGFR) is a dimeric membrane protein that regulates key aspects of cellular function. Activation of the EGFR is linked to…”
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5
Gating-like Motions and Wall Porosity in a DNA Nanopore Scaffold Revealed by Molecular Simulations
Published in ACS nano (24-11-2015)“…Recently developed synthetic membrane pores composed of folded DNA enrich the current range of natural and engineered protein pores and of nonbiogenic…”
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6
Membrane Perturbation by Carbon Nanotube Insertion: Pathways to Internalization
Published in Small (Weinheim an der Bergstrasse, Germany) (11-11-2013)“…Carbon nanotubes (CNTs) can penetrate the membranes of cells, offering prospects for nanomedicine but problems for nanotoxicity. Molecular simulations are used…”
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Structural Basis of X-ray-Induced Transient Photobleaching in a Photoactivatable Green Fluorescent Protein
Published in Journal of the American Chemical Society (23-12-2009)“…We have observed the photoactivatable fluorescent protein IrisFP in a transient dark state with near-atomic resolution. This dark state is assigned to a…”
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Induction of rare conformation of oligosaccharide by binding to calcium-dependent bacterial lectin: X-ray crystallography and modelling study
Published in European journal of medicinal chemistry (01-09-2019)“…Pathogenic micro-organisms utilize protein receptors (lectins) in adhesion to host tissues, a process that in some cases relies on the interaction between…”
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Effect of Noncanonical Amino Acids on Protein–Carbohydrate Interactions: Structure, Dynamics, and Carbohydrate Affinity of a Lectin Engineered with Fluorinated Tryptophan Analogs
Published in ACS chemical biology (17-08-2018)“…Protein–carbohydrate interactions play crucial roles in biology. Understanding and modifying these interactions is of major interest for fighting many…”
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10
Interfacial activation of M37 lipase: A multi-scale simulation study
Published in Biochimica et biophysica acta. Biomembranes (01-03-2017)“…Lipases are enzymes of biotechnological importance that function at the interface formed between hydrophobic and aqueous environments. Hydrophobic interfaces…”
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The effect of mutations in the lid region of Thermomyces lanuginosus lipase on interactions with triglyceride surfaces: A multi-scale simulation study
Published in Chemistry and physics of lipids (01-03-2018)“…•Lipases function at the interface between an amphiphilic molecular substrate surface and water.•Molecular simulations reveal interactions of Thermomyces…”
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Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations
Published in Proceedings of the National Academy of Sciences - PNAS (25-11-2008)“…Photoactivatable fluorescent proteins (FPs) are powerful fluorescent highlighters in live cell imaging and offer perspectives for optical nanoscopy and the…”
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Photoconversion of the Fluorescent Protein EosFP: A Hybrid Potential Simulation Study Reveals Intersystem Crossings
Published in Journal of the American Chemical Society (25-11-2009)“…Fluorescent proteins undergoing green to red photoconversion have proved to be essential tools in cell biology, notably in superlocalization nanoscopy…”
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14
Rational Design of Photoconvertible and Biphotochromic Fluorescent Proteins for Advanced Microscopy Applications
Published in Chemistry & biology (28-10-2011)“…Advanced fluorescence imaging, including subdiffraction microscopy, relies on fluorophores with controllable emission properties. Chief among these…”
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When Additive Molecular Dynamics Fails: Quantum Effects in Calcium-Dependent Lectin/Carbohydrate Complex
Published in Biophysical journal (15-02-2019)Get full text
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Biomimetic Phospholipid Membrane Organization on Graphene and Graphene Oxide Surfaces: A Molecular Dynamics Simulation Study
Published in ACS nano (28-02-2017)“…Supported phospholipid membrane patches stabilized on graphene surfaces have shown potential in sensor device functionalization, including biosensors and…”
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17
Lipase Dynamics and Activation: The Case of M37
Published in Biophysical journal (16-02-2016)Get full text
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Structure of Arabidopsis thaliana FUT1 Reveals a Variant of the GT-B Class Fold and Provides Insight into Xyloglucan Fucosylation
Published in The Plant cell (01-10-2016)“…The plant cell wall is a complex and dynamic network made mostly of cellulose, hemicelluloses, and pectins. Xyloglucan, the major hemicellulosic component in…”
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Transmembrane Helix Association of ErbB Receptors Investigated by Coarse-Grained Metadynamics Simulations
Published in Biophysical journal (29-01-2013)Get full text
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Highly Enhanced Conformational Sampling of the Transmembrane Domain of Egf Receptor Sheds Light on the Activation Mechanism
Published in Biophysical journal (28-01-2014)Get full text
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