Search Results - "Leigh, Jessica W."

popart: full‐feature software for haplotype network construction by Leigh, Jessica W., Bryant, David, Nakagawa, Shinichi

“…Summary Haplotype networks are an intuitive method for visualising relationships between individual genotypes at the population level. Here, we present popart,…”
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A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the “brown algal crown radiation” by Silberfeld, Thomas, Leigh, Jessica W., Verbruggen, Heroen, Cruaud, Corinne, de Reviers, Bruno, Rousseau, Florence

“…The most conspicuous feature in previous phaeophycean phylogenies is a large polytomy known as the brown algal crown radiation (BACR). The BACR encompasses 10…”
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Network analyses structure genetic diversity in independent genetic worlds by Halary, Sébastien, Leigh, Jessica W, Cheaib, Bachar, Lopez, Philippe, Bapteste, Eric

“…DNA flows between chromosomes and mobile elements, following rules that are poorly understood. This limited knowledge is partly explained by the limits of…”
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Phylogenomic Analyses Support the Monophyly of Excavata and Resolve Relationships among Eukaryotic "Supergroups" by Hampl, Vladimir, Hug, Laura, Leigh, Jessica W., Dacks, Joel B., Lang, B. Franz, Simpson, Alastair G. B., Roger, Andrew J., Palmer, Jeffrey D.

“…Nearly all of eukaryotic diversity has been classified into 6 suprakingdom-level groups (supergroups) based on molecular and morphological/cell-biological…”
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Evaluating phylogenetic congruence in the post-genomic era by Leigh, Jessica W, Lapointe, François-Joseph, Lopez, Philippe, Bapteste, Eric

“…Congruence is a broadly applied notion in evolutionary biology used to justify multigene phylogeny or phylogenomics, as well as in studies of coevolution,…”
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Monte Carlo Strategies for Selecting Parameter Values in Simulation Experiments by Leigh, Jessica W., Bryant, David

“…Simulation experiments are used widely throughout evolutionary biology and bioinformatics to compare models, promote methods, and test hypotheses. The biggest…”
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Testing Congruence in Phylogenomic Analysis by Leigh, Jessica W., Susko, Edward, Baumgartner, Manuela, Roger, Andrew J.

“…Phylogenomic analyses of large sets of genes or proteins have the potential to revolutionize our understanding of the tree of life. However, problems arise…”
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Hybridization may facilitate in situ survival of endemic species through periods of climate change by Becker, Matthias, Gruenheit, Nicole, Steel, Mike, Voelckel, Claudia, Deusch, Oliver, Heenan, Peter B., McLenachan, Patricia A., Kardailsky, Olga, Leigh, Jessica W., Lockhart, Peter J.

“…Predicting species’ chances of survival under climate change requires an understanding of their adaptive potential. Now research into hybridization—one…”
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Let Them Fall Where They May: Congruence Analysis in Massive Phylogenetically Messy Data Sets by Leigh, Jessica W., Schliep, Klaus, Lopez, Philippe, Bapteste, Eric

“…Interest in congruence in phylogenetic data has largely focused on issues affecting multicellular organisms, and animals in particular, in which the level of…”
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Phylogenomic Analyses Support the Monophyly of Taphrinomycotina, including Schizosaccharomyces Fission Yeasts by Liu, Yu, Leigh, Jessica W., Brinkmann, Henner, Cushion, Melanie T., Rodriguez-Ezpeleta, Naiara, Philippe, Hervé, Lang, B. Franz

“…Several morphologically dissimilar ascomycete fungi including Schizosaccharomyces, Taphrina, Saitoella, Pneumocystis, and Neolecta have been grouped into the…”
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Parameter Exploration in Simulation Experiments: A Bayesian Framework by Leigh, Jessica W, Bryant, David

“…Simulations often involve the use of model parameters which are unknown or uncertain. For this reason, simulation experiments are often repeated for multiple…”
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