Search Results - "Lee, Hayan"

Piercing the dark matter: bioinformatics of long-range sequencing and mapping by Sedlazeck, Fritz J., Lee, Hayan, Darby, Charlotte A., Schatz, Michael C.

“…Several new genomics technologies have become available that offer long-read sequencing or long-range mapping with higher throughput and higher resolution…”
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Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma by Cao, Wei, Lee, Hayan, Wu, Wei, Zaman, Aubhishek, McCorkle, Sean, Yan, Ming, Chen, Justin, Xing, Qinghe, Sinnott-Armstrong, Nasa, Xu, Hongen, Sailani, M. Reza, Tang, Wenxue, Cui, Yuanbo, liu, Jia, Guan, Hongyan, Lv, Pengju, Sun, Xiaoyan, Sun, Lei, Han, Pengli, Lou, Yanan, Chang, Jing, Wang, Jinwu, Gao, Yuchi, Guo, Jiancheng, Schenk, Gundolf, Shain, Alan Hunter, Biddle, Fred G., Collisson, Eric, Snyder, Michael, Bivona, Trever G.

“…Epigenetic landscapes can shape physiologic and disease phenotypes. We used integrative, high resolution multi-omics methods to delineate the methylome…”
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Thiaoxaaza-Macrocyclic Chromoionophores as Mercury(II) Sensors: Synthesis and Color Modulation by Lee, Hayan, Lee, Shim Sung

“…Azo-coupled macrocyclic chromoionophores incorporating benzene (L1) and pyridine (L2) subunits were synthesized, respectively. In a cation-induced color change…”
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A Study on the Genetic Variations and Germination Characteristics of Rhododendron sobayakiense to Prepare for Climate Change Threat by Eun-hye Kim, Sle-gee Lee, Sung-won Son, So-yeon Lee, Hayan Lee

“…Rhododendron sobayakiense is an endemic and near-threatened species (Korean Red List, NT) found in the alpine regions of South Korea that requires…”
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Hybrid assembly with long and short reads improves discovery of gene family expansions by Miller, Jason R, Zhou, Peng, Mudge, Joann, Gurtowski, James, Lee, Hayan, Ramaraj, Thiruvarangan, Walenz, Brian P, Liu, Junqi, Stupar, Robert M, Denny, Roxanne, Song, Li, Singh, Namrata, Maron, Lyza G, McCouch, Susan R, McCombie, W Richard, Schatz, Michael C, Tiffin, Peter, Young, Nevin D, Silverstein, Kevin A T

“…Long-read and short-read sequencing technologies offer competing advantages for eukaryotic genome sequencing projects. Combinations of both may be appropriate…”
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Candidate variants in TUB are associated with familial tremor by Sailani, M. Reza, Jahanbani, Fereshteh, Abbott, Charles W, Lee, Hayan, Zia, Amin, Rego, Shannon, Winkelmann, Juliane, Hopfner, Franziska, Khan, Tahir N, Katsanis, Nicholas, Müller, Stefanie H, Berg, Daniela, Lyman, Katherine M, Mychajliw, Christian, Deuschl, Günther, Bernstein, Jonathan A, Kuhlenbäumer, Gregor, Snyder, Michael P

“…Essential tremor (ET) is the most common adult-onset movement disorder. In the present study, we performed whole exome sequencing of a large ET-affected family…”
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The Dormancy Types and Germination Characteristics of the Seeds of Berberis koreana Palibin, an Endemic Species of Korea by Kim, Do-Hyun, Kim, Sang-Geun, Lee, Hayan, Lee, Do-Hyung

“…Berberis koreana Palibin is an endemic plant native to Korea. In this study, we aimed to study the seed germination of this species using a water imbibition…”
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Seed Longevity and Germinability of Pulsatilla dahurica (Fisch. ex DC.) Spreng after Storage and Accelerated Aging Test by Park, Kyungtae, Lee, Sang Yeob, Ji, Boran, Jang, Bo-Kook, Lee, Hamin, Lee, Hayan, Song, Se-Kyu, Cho, Ju-Sung

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SplitMEM: a graphical algorithm for pan-genome analysis with suffix skips by Marcus, Shoshana, Lee, Hayan, Schatz, Michael C

“…Genomics is expanding from a single reference per species paradigm into a more comprehensive pan-genome approach that analyzes multiple individuals together. A…”
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On the Security of Intra-Car Wireless Sensor Networks by Hayan Lee, Hsin-Mu Tsai, Tonguz, O.K.

“…Due to the increasing oil prices, reducing the weight of future cars will be important. One way to do this is by replacing wired sensors and their cables with…”
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Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score by LEE, Hayan, SCHATZ, Michael C

“…Genome resequencing and short read mapping are two of the primary tools of genomics and are used for many important applications. The current state-of-the-art…”
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Reevaluating the capability of Taq DNA polymerase: long PCR amplification by Lee, Hayan, Kim, Kyung-Nam, Kee Chae, Young

“…We tested the ability of Taq DNA polymerase (Taq) to amplify long DNA fragments and showed that, if the conditions were set properly, Taq could successfully…”
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Lifelong physical activity is associated with promoter hypomethylation of genes involved in metabolism, myogenesis, contractile properties and oxidative stress resistance in aged human skeletal muscle by Sailani, M. Reza, Halling, Jens Frey, Møller, Henrik Devitt, Lee, Hayan, Plomgaard, Peter, Pilegaard, Henriette, Snyder, Michael P., Regenberg, Birgitte

“…Lifelong regular physical activity is associated with reduced risk of type 2 diabetes (T2D), maintenance of muscle mass and increased metabolic capacity…”
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Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment by Roodgar, Morteza, Good, Benjamin H, Garud, Nandita R, Martis, Stephen, Avula, Mohan, Zhou, Wenyu, Lancaster, Samuel M, Lee, Hayan, Babveyh, Afshin, Nesamoney, Sophia, Pollard, Katherine S, Snyder, Michael P

“…Gut microbial communities can respond to antibiotic perturbations by rapidly altering their taxonomic and functional composition. However, little is known…”
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The pineapple genome and the evolution of CAM photosynthesis by Ming, Ray, VanBuren, Robert, Wai, Ching Man, Tang, Haibao, Schatz, Michael C, Bowers, John E, Lyons, Eric, Wang, Ming-Li, Chen, Jung, Biggers, Eric, Zhang, Jisen, Huang, Lixian, Zhang, Lingmao, Miao, Wenjing, Zhang, Jian, Ye, Zhangyao, Miao, Chenyong, Lin, Zhicong, Wang, Hao, Zhou, Hongye, Yim, Won C, Priest, Henry D, Zheng, Chunfang, Woodhouse, Margaret, Edger, Patrick P, Guyot, Romain, Guo, Hao-Bo, Guo, Hong, Zheng, Guangyong, Singh, Ratnesh, Sharma, Anupma, Min, Xiangjia, Zheng, Yun, Lee, Hayan, Gurtowski, James, Sedlazeck, Fritz J, Harkess, Alex, McKain, Michael R, Liao, Zhenyang, Fang, Jingping, Liu, Juan, Zhang, Xiaodan, Zhang, Qing, Hu, Weichang, Qin, Yuan, Wang, Kai, Chen, Li-Yu, Shirley, Neil, Lin, Yann-Rong, Liu, Li-Yu, Hernandez, Alvaro G, Wright, Chris L, Bulone, Vincent, Tuskan, Gerald A, Heath, Katy, Zee, Francis, Moore, Paul H, Sunkar, Ramanjulu, Leebens-Mack, James H, Mockler, Todd, Bennetzen, Jeffrey L, Freeling, Michael, Sankoff, David, Paterson, Andrew H, Zhu, Xinguang, Yang, Xiaohan, Smith, J Andrew C, Cushman, John C, Paull, Robert E, Yu, Qingyi

“…Ray Ming, Robert Paull, Qingyi Yu and colleagues report the genome sequences of two cultivated pineapple varieties and one wild pineapple relative. Their…”
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Comparison of the seed dormancy and germination characteristics of six Clematis species from South Korea by Jang, Bo-Kook, Park, Kyungtae, Lee, Sang Yeob, Lee, Hayan, Song, Se-Kyu, Kim, Jinki, Lee, Cheol Hee, Cho, Ju-Sung

“…•Six Korean Clematis species display morphological or morphophysiological dormancy.•Germination indices are improved in Clematis seeds by 100 mg/L GA4+7…”
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Epigenetic balance ensures mechanistic control of MLL amplification and rearrangement by Gray, Zach H., Chakraborty, Damayanti, Duttweiler, Reuben R., Alekbaeva, Gulnaz D., Murphy, Sedona E., Chetal, Kashish, Ji, Fei, Ferman, Benjamin I., Honer, Madison A., Wang, Zhentian, Myers, Cynthia, Sun, Renhong, Kaniskan, H. Ümit, Toma, Monika Maria, Bondarenko, Elena A., Santoro, John N., Miranda, Christopher, Dillingham, Megan E., Tang, Ran, Gozani, Or, Jin, Jian, Skorski, Tomasz, Duy, Cihangir, Lee, Hayan, Sadreyev, Ruslan I., Whetstine, Johnathan R.

“…MLL/KMT2A amplifications and translocations are prevalent in infant, adult, and therapy-induced leukemia. However, the molecular contributor(s) to these…”
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TET1 and TDG Suppress Inflammatory Response in Intestinal Tumorigenesis: Implications for Colorectal Tumors With the CpG Island Methylator Phenotype by Tricarico, Rossella, Madzo, Jozef, Scher, Gabrielle, Cohen, Maya, Jelinek, Jaroslav, Maegawa, Shinji, Nagarathinam, Rajeswari, Scher, Carly, Chang, Wen-Chi, Nicolas, Emmanuelle, Slifker, Michael, Zhou, Yan, Devarajan, Karthik, Cai, Kathy Q., Kwok, Tim, Nakajima, Pamela, Xu, Jinfei, Mancuso, Pietro, Doneddu, Valentina, Bagella, Luigi, Williams, Riley, Balachandran, Siddharth, Maskalenko, Nicholas, Campbell, Kerry, Ma, Xueying, Cañadas, Israel, Viana-Errasti, Julen, Moreno, Victor, Valle, Laura, Grivennikov, Sergei, Peshkova, Iuliia, Kurilenko, Natalia, Mazitova, Aleksandra, Koltsova, Ekaterina, Lee, Hayan, Walsh, Martin, Duttweiler, Reuben, Whetstine, Johnathan R., Yen, Timothy J., Issa, Jean-Pierre, Bellacosa, Alfonso

“…Aberrant DNA methylation is frequent in colorectal cancer (CRC), but underlying mechanisms and pathologic consequences are poorly understood. We disrupted…”
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Apical receptors on M cells can be used as mucosal immune modulator (MUC9P.749) by Jang, Yong-Suk, Kim, Sae-Hae, Lee, Hayan, Park, Jisang

“…Abstract Intestinal epithelial cells which are exposed to microbes tightly restrict the influx of luminal antigens. They also contribute to establish the…”
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The Dormancy Types and Germination Characteristics of the Seeds of IBerberis koreana/I Palibin, an Endemic Species of Korea by Kim, Do-Hyun, Kim, Sang-Geun, Lee, Hayan, Na, Chae-Sun, Lee, Do-Hyung

“…Berberis koreana Palibin is an endemic plant native to Korea. In this study, we aimed to study the seed germination of this species using a water imbibition…”
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