Search Results - "Lebedenko, Olga O."
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Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD
Published in Journal of structural biology. X (01-01-2023)“…[Display omitted] •A specific isotope labeling scheme and fast magic-angle spinning NMR provide insight into ring flips.•One of the two phenylalanines, Phe4,…”
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Order/Disorder Transitions Upon Protein Binding: A Unifying Perspective
Published in Proteins, structure, function, and bioinformatics (01-12-2024)“…ABSTRACT When two proteins bind to each other, this process is often accompanied by a change in their structural states (from disordered to ordered or vice…”
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Conformational and Interaction Landscape of Histone H4 Tails in Nucleosomes Probed by Paramagnetic NMR Spectroscopy
Published in Journal of the American Chemical Society (22-11-2023)“…The fundamental repeat unit of chromatin, the nucleosome, consists of approximately 147 base pairs of double-stranded DNA and a histone protein octamer…”
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Using NMR diffusion data to validate MD models of disordered proteins: Test case of N-terminal tail of histone H4
Published in Biophysical journal (02-01-2024)“…MD simulations can provide uniquely detailed models of intrinsically disordered proteins (IDPs). However, these models need careful experimental validation…”
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5
Benchmarking MD Models of Disordered Proteins using NMR Data on Translational Diffusion
Published in Biophysical journal (12-02-2021)Get full text
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Aromatic ring flips in differently packed ubiquitin protein crystals from MAS NMR and MD
Published in Journal of structural biology. X (2023)“…Probing the dynamics of aromatic side chains provides important insights into the behavior of a protein because flips of aromatic rings in a protein’s…”
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