Search Results - "Laskowski, A."

Semiconductor–Electrocatalyst Interfaces: Theory, Experiment, and Applications in Photoelectrochemical Water Splitting by Nellist, Michael R, Laskowski, Forrest A. L, Lin, Fuding, Mills, Thomas J, Boettcher, Shannon W

“…Light-absorbing semiconductor electrodes coated with electrocatalysts are key components of photoelectrochemical energy conversion and storage systems. Efforts…”
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LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery by Laskowski, Roman A, Swindells, Mark B

“…We describe a graphical system for automatically generating multiple 2D diagrams of ligand–protein interactions from 3D coordinates. The diagrams portray the…”
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PDBsum new things by Laskowski, Roman A

“…PDBsum (http://www.ebi.ac.uk/pdbsum) provides summary information about each experimentally determined structural model in the Protein Data Bank (PDB). Here we…”
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Metal Oxide/(oxy)hydroxide Overlayers as Hole Collectors and Oxygen-Evolution Catalysts on Water-Splitting Photoanodes by Laskowski, Forrest A. L, Nellist, Michael R, Qiu, Jingjing, Boettcher, Shannon W

“…Solar water splitting provides a mechanism to convert and store solar energy in the form of stable chemical bonds. Water-splitting systems often include…”
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PDBsum: Structural summaries of PDB entries by Laskowski, Roman A., Jabłońska, Jagoda, Pravda, Lukáš, Vařeková, Radka Svobodová, Thornton, Janet M.

“…PDBsum is a web server providing structural information on the entries in the Protein Data Bank (PDB). The analyses are primarily image‐based and include…”
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A structural biology community assessment of AlphaFold2 applications by Akdel, Mehmet, Pires, Douglas E. V., Pardo, Eduard Porta, Jänes, Jürgen, Zalevsky, Arthur O., Mészáros, Bálint, Bryant, Patrick, Good, Lydia L., Laskowski, Roman A., Pozzati, Gabriele, Shenoy, Aditi, Zhu, Wensi, Kundrotas, Petras, Serra, Victoria Ruiz, Rodrigues, Carlos H. M., Dunham, Alistair S., Burke, David, Borkakoti, Neera, Velankar, Sameer, Frost, Adam, Basquin, Jérôme, Lindorff-Larsen, Kresten, Bateman, Alex, Kajava, Andrey V., Valencia, Alfonso, Ovchinnikov, Sergey, Durairaj, Janani, Ascher, David B., Thornton, Janet M., Davey, Norman E., Stein, Amelie, Elofsson, Arne, Croll, Tristan I., Beltrao, Pedro

“…Most proteins fold into 3D structures that determine how they function and orchestrate the biological processes of the cell. Recent developments in…”
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VarSite: Disease variants and protein structure by Laskowski, Roman A., Stephenson, James D., Sillitoe, Ian, Orengo, Christine A., Thornton, Janet M.

“…VarSite is a web server mapping known disease‐associated variants from UniProt and ClinVar, together with natural variants from gnomAD, onto protein 3D…”
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Nanoscale semiconductor/catalyst interfaces in photoelectrochemistry by Laskowski, Forrest A. L., Oener, Sebastian Z., Nellist, Michael R., Gordon, Adrian M., Bain, David C., Fehrs, Jessica L., Boettcher, Shannon W.

“…Semiconductor structures (for example, films, wires, particles) used in photoelectrochemical devices are often decorated with nanoparticles that catalyse…”
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PDBsum: summaries and analyses of PDB structures by Laskowski, R A

“…PDBsum is a web-based database providing a largely pictorial summary of the key information on each macromolecular structure deposited at the Protein Data Bank…”
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VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations by Stephenson, James D, Laskowski, Roman A, Nightingale, Andrew, Hurles, Matthew E, Thornton, Janet M

“…Abstract Motivation Understanding the protein structural context and patterning on proteins of genomic variants can help to separate benign from pathogenic…”
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An Exploration of Sulfur Redox in Lithium Battery Cathodes by Zak, Joshua J., Kim, Seong Shik, Laskowski, Forrest A. L., See, Kimberly A.

“…Secondary Li-ion batteries have enabled a world of portable electronics and electrification of personal and commercial transportation. However, the charge…”
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The structural basis of allosteric regulation in proteins by Laskowski, Roman A., Gerick, Fabian, Thornton, Janet M.

“…Allosteric regulation of protein function occurs when the regulatory trigger, such as the binding of a small-molecule effector or inhibitor, takes place some…”
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ProFunc: a server for predicting protein function from 3D structure by Laskowski, Roman A., Watson, James D., Thornton, Janet M.

“…ProFunc (http://www.ebi.ac.uk/thornton-srv/databases/ProFunc) is a web server for predicting the likely function of proteins whose 3D structure is known but…”
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Ankyrin Repeat Proteins Comprise a Diverse Family of Bacterial Type IV Effectors by Pan, Xiaoxiao, Lührmann, Anja, Satoh, Ayano, Laskowski-Arce, Michelle A, Roy, Craig R

“…Specialized secretion systems are used by many bacteria to deliver effector proteins into host cells that can either mimic or disrupt the function of…”
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Effect of Polysulfide Speciation on Mg Anode Passivation in Mg–S Batteries by Qian, Michelle D., Laskowski, Forrest A. L., Ware, Skyler D., See, Kimberly A.

“…Mg–S batteries are a promising next-generation system for beyond conventional Li-ion chemistry. The Mg–S architecture pairs a Mg metal anode with an…”
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PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids by Laskowski, Roman A., Chistyakov, Victor V., Thornton, Janet M.

“…PDBsum is a database of mainly pictorial summaries of the 3D structures of proteins and nucleic acids in the Protein Data Bank. Its pages aim to provide an…”
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Rising levels of atmospheric oxygen and evolution of Nrf2 by Gacesa, Ranko, Dunlap, Walter C., Barlow, David J., Laskowski, Roman A., Long, Paul F.

“…In mammals, the master transcription regulator of antioxidant defences is provided by the Nrf2 protein. Phylogenetic analyses of Nrf2 sequences are used here…”
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An automated protocol for modelling peptide substrates to proteases by Ochoa, Rodrigo, Magnitov, Mikhail, Laskowski, Roman A, Cossio, Pilar, Thornton, Janet M

“…Proteases are key drivers in many biological processes, in part due to their specificity towards their substrates. However, depending on the family and…”
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Mg Anode Passivation Caused by the Reaction of Dissolved Sulfur in Mg–S Batteries by Laskowski, Forrest A. L, Stradley, Steven H, Qian, Michelle D, See, Kimberly A

“…As Li-ion battery optimization approaches theoretical limits, interest has grown in designing next-generation batteries from low-cost earth-abundant materials…”
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Predicting protein function from sequence and structural data by Watson, James D, Laskowski, Roman A, Thornton, Janet M

“…When a protein's function cannot be experimentally determined, it can often be inferred from sequence similarity. Should this process fail, analysis of the…”
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