Search Results - "Larimer, F.W"

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation by Chisholm, Sallie W, Rocap, Gabrielle, Larimer, Frank W, Lamerdin, Jane, Malfatti, Stephanie, Chain, Patrick, Ahlgren, Nathan A, Arellano, Andrae, Coleman, Maureen, Hauser, Loren, Hess, Wolfgang R, Johnson, Zackary I, Land, Miriam, Lindell, Debbie, Post, Anton F, Regala, Warren, Shah, Manesh, Shaw, Stephanie L, Steglich, Claudia, Sullivan, Matthew B, Ting, Claire S, Tolonen, Andrew, Webb, Eric A, Zinser, Erik R

“…The marine unicellular cyanobacterium Prochlorococcus is the smallest-known oxygen-evolving autotroph. It numerically dominates the phytoplankton in the…”
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The genome of a motile marine Synechococcus by Palenik, B, Brahamsha, B, Larimer, F. W, Land, M, Hauser, L, Chain, P, Lamerdin, J, Regala, W, Allen, E. E, McCarren, J, Paulsen, I, Dufresne, A, Partensky, F, Webb, E. A, Waterbury, J

“…Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans. Here we have sequenced and…”
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Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris by Harwood, Caroline S, Larimer, Frank W, Chain, Patrick, Hauser, Loren, Lamerdin, Jane, Malfatti, Stephanie, Do, Long, Land, Miriam L, Pelletier, Dale A, Beatty, J Thomas, Lang, Andrew S, Tabita, F Robert, Gibson, Janet L, Hanson, Thomas E, Bobst, Cedric, Torres, Janelle L Torres y, Peres, Caroline, Harrison, Faith H, Gibson, Jane

“…Rhodopseudomonas palustris is among the most metabolically versatile bacteria known. It uses light, inorganic compounds, or organic compounds, for energy. It…”
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Role of asparagine-111 at the active site of ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum as explored by site-directed mutagenesis by SOPER, T. S, LARIMER, F. W, MURAL, R. J, LEE, E. H, HARTMAN, F. C

“…Crystallographic studies of ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodospirillum rubrum suggest that active-site Asn(111) interacts with Mg2+…”
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Electrochemically induced adsorption of radio-labeled DNA on gold and HOPG substrates for STM investigations by Brown, G M, Allison, D P, Warmack, R J, Jacobson, K B, Larimer, F W, Woychik, R P, Carrier, W L

“…In a scanning tunneling microscope (STM) electrochemical cell we have studied the effects of electrode potential on both the surface topography and the…”
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development of two flanking SCAR markers linked to a sex determination locus in Salix viminalis L by Gunter, L.E, Roberts, G.T, Lee, K, Larimer, F.W, Tuskan, G.A

“…Most studies of sex determination systems in plants involve dioecious annuals that have known sex chromosomes. Despite the absence of such structures in the…”
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Identification of residues of spinach thioredoxin f that influence interactions with target enzymes by Geck, M.K. (University of Tennessee-Oak Ridge Graduate School of Biomedical Sciences, Oak Ridge, TN.), Larimer, F.W, Hartman, F.C

“…The necessity for two types of thioredoxins (Trx f and m) within chloroplasts of higher plants that mediate the same redox chemistry with various target…”
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The Molecular Pathway for the Regulation of Phosphoribulokinase by Thioredoxin f(∗) by Brandes, Hillel K., Larimer, Frank W., Hartman, Fred C.

“…Phosphoribulokinase (PRK) is one of several plant enzymes that is regulated by thiol-disulfide exchange as mediated by thioredoxin, which contains spatially…”
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D-ribose-5-phosphate isomerase from spinach: heterologous overexpression, purification, characterization, and site-directed mutagenesis of the recombinant enzyme by Jung, C.H, Hartman, F.C, Lu, T.Y.S, Larimer, F.W

“…A cDNA encoding spinach chloroplastic ribose-5-phosphate isomerase (RPI) was cloned and overexpressed in Escherichia coli, and a purification scheme for the…”
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Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs by Doktycz, M.J. (Oak Ridge National Laboratory, TN.), Larimer, F.W, Pastrnak, M, Stevens, A

“…The overall folded (global) structure of mRNA may be critical to translation and turnover control mechanisms, but it has received little experimental…”
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Identification of a catalytic aspartyl residue of D-ribulose 5-phosphate 3-epimerase by site-directed mutagenesis by Chen, Y.R. (University of Tennessee-Oak Ridge Graduate School of Biomedical Sciences, Oak Ridge, TN.), Larimer, F.W, Serpersu, E.H, Hartman, F.C

“…Guided by comparative sequence considerations, we have examined the possibility of a catalytic role of Asp186 of D-ribulose 5-phosphate epimerase by…”
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Mutagenicity of methylated N-nitrosopiperidines in Saccharomyces cerevisiae by Larimer, F W, Ramey, D W, Lijinsky, W, Epler, J L

“…N-Nitrosopiperidine (NP) and a number of methylated derivatives were examined for mutagenicity in Saccharomyces cerevisiae. NP, 2-methyl-NP, 3-methyl-NP,…”
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The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis by Larimer, F.W, Perry, J.R, Hardigree, A.A

“…The REV1 gene of Saccharomyces cerevisiae is required for normal induction of mutations by physical and chemical agents. We have determined the sequence of a…”
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Mechanistic insights provided by deletion of a flexible loop at the active site of ribulose-1,5-bisphosphate carboxylase/oxygenase by Larson, Eric M, Larimer, Frank W, Hartman, Fred C

“…To evaluate the functions of flexible loop 6 at the active site of Rhodospirillum rubrum D-ribulose-1,5-bisphosphate carboxylase/oxygenase, the loop was…”
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Direct identification of the primary nucleophile of thioredoxin f by Brandes, H.K., Larimer, F.W., Geck, M.K., Stringer, C.D., Schürmann, P., Hartman, F.C.

“…Thioredoxin, by virtue of the proximal active-site sulfhydryls (Trp-Cys-Gly-Pro-Cys), catalyzes thiol-disulfide exchange with specific target enzymes…”
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D-Ribulose-5-Phosphate 3-Epimerase: Cloning and Heterologous Expression of the Spinach Gene, and Purification and Characterization of the Recombinant Enzyme by Yuh-Ru Chen, Hartman, Fred C., Tse-Yuan S. Lu, Larimer, Frank W.

“…We have achieved, to our knowledge, the first high-level heterologous expression of the gene encoding D-ribulose-5-phosphate 3-epimerase from any source,…”
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Beta-elimination of phosphate from reaction intermediates by site-directed mutants of ribulose-bisphosphate carboxylase/oxygenase by LARIMER, F. W, HARPEL, M. R, HARTMAN, F. C

“…Five residues (Thr-53, Asn-54, Gly-370, Gly-393, and Gly-394) of Rhodospirillum rubrum ribulose-bisphosphate carboxylase/oxygenase are positioned to serve as…”
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Roles and Microenvironments of Tryptophanyl Residues of Spinach Phosphoribulokinase by Brandes, Hillel K., Larimer, Frank W., Lu, Tse-Yuan S., Dey, Joykrishna, Hartman, Fred C.

“…Phosphoribulokinase is one of several Calvin cycle enzymes that are light-regulated via the ferredoxin–thioredoxin system (R. A. Wolosiuk and B. B. Buchanan,…”
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Efficient expression of the genes for spinach phosphoribulokinase in Pichia pastoris and utilization of the recombinant enzyme to explore the role of regulatory cysteinyl residues by site-directed mutagenesis by Brandes, H.K. (University of Tennessee-Oak Ridge Graduate School of Biomedical Sciences, Oak Ridge, TN.), Hartman, F.C, Lu, T.Y.S, Larimer, F.W

“…Phosphoribulokinase (PRK), unique to photosynthetic organisms, is regulated in higher plants by thioredoxin-mediated thiol-disulfide exchange in a…”
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Functional analysis of the putative catalytic bases His-321 and Ser-368 of Rhodospirillum rubrum ribulose bisphosphate carboxylase/oxygenase by site-directed mutagenesis by HARPEL, M. R, LARIMER, F. W, HARTMAN, F. C

“…Numerous candidates have been suggested according to chemical and structural criteria for the active site base of ribulose bisphosphate carboxylase/oxygenase…”
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