Search Results - "Land, L"

Prodigal: prokaryotic gene recognition and translation initiation site identification by Hyatt, Doug, Chen, Gwo-Liang, Locascio, Philip F, Land, Miriam L, Larimer, Frank W, Hauser, Loren J

“…The quality of automated gene prediction in microbial organisms has improved steadily over the past decade, but there is still room for improvement. Increasing…”
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Influence of comorbidity on the effect of adjuvant treatment and age in patients with early-stage breast cancer by Land, L H, Dalton, S O, Jensen, M-B, Ewertz, M

“…Background: Prevalence of comorbidity at breast cancer diagnosis increases with age and is likely to influence the likelihood of receiving treatment according…”
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Enigmatic, ultrasmall, uncultivated Archaea by Baker, Brett J, Comolli, Luis R, Dick, Gregory J, Hauser, Loren J, Hyatt, Doug, Dill, Brian D, Land, Miriam L, VerBerkmoes, Nathan C, Hettich, Robert L, Banfield, Jillian F

“…Metagenomics has provided access to genomes of as yet uncultivated microorganisms in natural environments, yet there are gaps in our knowledge--particularly…”
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Mutant alcohol dehydrogenase leads to improved ethanol tolerance in Clostridium thermocellum by Brown, Steven D., Guss, Adam M., Karpinets, Tatiana V., Parks, Jerry M., Smolin, Nikolai, Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Bhandiwad, Ashwini, Rodriguez, Miguel, Raman, Babu, Shao, Xiongjun, Mielenz, Jonathan R., Smith, Jeremy C., Keller, Martin, Lynd, Lee R.

“…Clostridium thermocellum is a thermophilic, obligately anaerobic, Gram-positive bacterium that is a candidate microorganism for converting cellulosic biomass…”
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The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation by Mavromatis, Konstantinos, Land, Miriam L, Brettin, Thomas S, Quest, Daniel J, Copeland, Alex, Clum, Alicia, Goodwin, Lynne, Woyke, Tanja, Lapidus, Alla, Klenk, Hans Peter, Cottingham, Robert W, Kyrpides, Nikos C

“…The emergence of next generation sequencing (NGS) has provided the means for rapid and high throughput sequencing and data generation at low cost, while…”
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Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides by BROWN, Steven D, UTTURKAR, Sagar M, KLINGEMAN, Dawn M, JOHNSON, Courtney M, MARTIN, Stanton L, LAND, Miriam L, LU, Tse-Yuan S, SCHADT, Christopher W, DOKTYCZ, Mitchel J, PELLETIER, Dale A

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Genome Sequence of the Obligate Methanotroph Methylosinus trichosporium Strain OB3b by STEIN, Lisa Y, YOON, Sukhwan, BRUCE, D, CHENG, J.-F, COPELAND, A, GOODWIN, Lynne, SHUNSHENG HAN, HAUSER, Loren, JETTEN, Mike S. M, LAJUS, Aurélie, LAND, M. L, LAPIDUS, A, SEMRAU, Jeremy D, LUCAS, S, MEDIGUE, Claudine, PITLUCK, S, WOKE, Tanja, ZEYTUN, Ahmet, KLOTZ, Martin G, DISPIRITO, Alan A, CROMBIE, Andrew, MURRELL, J. Colin, VUILLEUMIER, Stéphane, KALYUZHNAYA, Marina G, OP DEN CAMP, Huub J. M, BRINGEL, Françoise

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Complete Genome Sequences of Six Strains of the Genus Methylobacterium by Marx, Christopher J, Bringel, Françoise, Chistoserdova, Ludmila, Moulin, Lionel, Farhan Ul Haque, Muhammad, Fleischman, Darrell E, Gruffaz, Christelle, Jourand, Philippe, Knief, Claudia, Lee, Ming-Chun, Muller, Emilie E. L, Nadalig, Thierry, Peyraud, Rémi, Roselli, Sandro, Russ, Lina, Goodwin, Lynne A, Ivanova, Natalia, Kyrpides, Nikos, Lajus, Aurélie, Land, Miriam L, Médigue, Claudine, Mikhailova, Natalia, Nolan, Matt, Woyke, Tanja, Stolyar, Sergey, Vorholt, Julia A, Vuilleumier, Stéphane

“…The complete and assembled genome sequences were determined for six strains of the alphaproteobacterial genus Methylobacterium, chosen for their key…”
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Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata by PERSSON, Tomas, BENSON, David R, SHUNSHENG HAN, HAN, James, WOYKE, Tanja, PITLUCK, Sam, PENNACCHIO, Len, NOLAN, Matt, IVANOVA, Natalia, PATI, Amrita, LAND, Miriam L, PAWLOWSKI, Katharina, NORMAND, Philippe, BERRY, Alison M, VANDEN HEUVEL, Brian, PUJIC, Petar, CHERTKOV, Olga, TESHIMA, Hazuki, BRUCE, David C, DETTER, Chris, TAPIA, Roxanne

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis by Utturkar, Sagar M, Cude, W Nathan, Robeson, Jr, Michael S, Yang, Zamin K, Klingeman, Dawn M, Land, Miriam L, Allman, Steve L, Lu, Tse-Yuan S, Brown, Steven D, Schadt, Christopher W, Podar, Mircea, Doktycz, Mitchel J, Pelletier, Dale A

“…Bacterial endophytes that colonize Populus trees contribute to nutrient acquisition, prime immunity responses, and directly or indirectly increase both above-…”
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Insights into the Evolution of Yersinia pestis through Whole-Genome Comparison with Yersinia pseudotuberculosis by Chain, P. S. G., Carniel, E., Larimer, F. W., Lamerdin, J., Stoutland, P. O., Regala, W. M., Georgescu, A. M., Vergez, L. M., Land, M. L., Motin, V. L., Brubaker, R. R., Fowler, J., Hinnebusch, J., Marceau, M., Medigue, C., Simonet, M., Chenal-Francisque, V., Souza, B., Dacheux, D., Elliott, J. M., Derbise, A., Hauser, L. J., Garcia, E., Falkow, Stanley

“…Yersinia pestis, the causative agent of plague, is a highly uniform clone that diverged recently from the enteric pathogen Yersinia pseudotuberculosis. Despite…”
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Health Care Workforce Development to Enhance Mental and Behavioral Health of Children and Youths by Boat, Thomas F, Land, Jr, Marshall L, Leslie, Laurel K

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The genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducens by Aklujkar, Muktak, Krushkal, Julia, DiBartolo, Genevieve, Lapidus, Alla, Land, Miriam L, Lovley, Derek R

“…The genome sequence of Geobacter metallireducens is the second to be completed from the metal-respiring genus Geobacter, and is compared in this report to that…”
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Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus by Tang, Kuo-Hsiang, Barry, Kerrie, Chertkov, Olga, Dalin, Eileen, Han, Cliff S, Hauser, Loren J, Honchak, Barbara M, Karbach, Lauren E, Land, Miriam L, Lapidus, Alla, Larimer, Frank W, Mikhailova, Natalia, Pitluck, Samuel, Pierson, Beverly K, Blankenship, Robert E

“…Chloroflexus aurantiacus is a thermophilic filamentous anoxygenic phototrophic (FAP) bacterium, and can grow phototrophically under anaerobic conditions or…”
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Genome Sequence of the Chemolithoautotrophic Nitrite-Oxidizing Bacterium Nitrobacter winogradskyi Nb-255 by Starkenburg, Shawn R, Chain, Patrick S. G, Sayavedra-Soto, Luis A, Hauser, Loren, Land, Miriam L, Larimer, Frank W, Malfatti, Stephanie A, Klotz, Martin G, Bottomley, Peter J, Arp, Daniel J, Hickey, William J

“…The alphaproteobacterium Nitrobacter winogradskyi (ATCC 25391) is a gram-negative facultative chemolithoautotroph capable of extracting energy from the…”
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Paradigm for industrial strain improvement identifies sodium acetate tolerance loci in Zymomonas mobilis and Saccharomyces cerevisiae by Yang, Shihui, Land, Miriam L., Klingeman, Dawn M., Pelletier, Dale A., Lu, Tse-Yuan S., Martin, Stanton L., Guo, Hao-Bo, Smith, Jeremy C., Brown, Steven D., Demain, Arnold L.

“…The application of systems biology tools holds promise for rational industrial microbial strain development. Here, we characterize a Zymomonas mobilis mutant…”
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Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle by Walworth, Nathan, Pfreundt, Ulrike, Nelson, William C, Mincer, Tracy, Heidelberg, John F, Fu, Feixue, Waterbury, John B, Glavina del Rio, Tijana, Goodwin, Lynne, Kyrpides, Nikos C, Land, Miriam L, Woyke, Tanja, Hutchins, David A, Hess, Wolfgang R, Webb, Eric A

“…Understanding the evolution of the free-living, cyanobacterial, diazotroph Trichodesmium is of great importance because of its critical role in oceanic…”
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Complete Genome Sequence of Nitrosospira multiformis, an Ammonia-Oxidizing Bacterium from the Soil Environment by Norton, Jeanette M, Klotz, Martin G, Stein, Lisa Y, Arp, Daniel J, Bottomley, Peter J, Chain, Patrick S.G, Hauser, Loren J, Land, Miriam L, Larimer, Frank W, Shin, Maria W, Starkenburg, Shawn R

“…The complete genome of the ammonia-oxidizing bacterium Nitrosospira multiformis (ATCC 25196T) consists of a circular chromosome and three small plasmids…”
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Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris by Harwood, Caroline S, Larimer, Frank W, Chain, Patrick, Hauser, Loren, Lamerdin, Jane, Malfatti, Stephanie, Do, Long, Land, Miriam L, Pelletier, Dale A, Beatty, J Thomas, Lang, Andrew S, Tabita, F Robert, Gibson, Janet L, Hanson, Thomas E, Bobst, Cedric, Torres, Janelle L Torres y, Peres, Caroline, Harrison, Faith H, Gibson, Jane

“…Rhodopseudomonas palustris is among the most metabolically versatile bacteria known. It uses light, inorganic compounds, or organic compounds, for energy. It…”
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Report of a Joint Association of Pediatric Program Directors–American Board of Pediatrics Workshop: Preparing Future Pediatricians for the Mental Health Crisis by McMillan, Julia A., Land, Marshall L., Rodday, Angie M., Wills, Kelly, Green, Cori M., Leslie, Laurel K.

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