Search Results - "Lakin, Steven"

MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data by Doster, Enrique, Lakin, Steven M, Dean, Christopher J, Wolfe, Cory, Young, Jared G, Boucher, Christina, Belk, Keith E, Noyes, Noelle R, Morley, Paul S

“…Abstract Antimicrobial resistance (AMR) is a threat to global public health and the identification of genetic determinants of AMR is a critical component to…”
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MEGARes: an antimicrobial resistance database for high throughput sequencing by Lakin, Steven M, Dean, Chris, Noyes, Noelle R, Dettenwanger, Adam, Ross, Anne Spencer, Doster, Enrique, Rovira, Pablo, Abdo, Zaid, Jones, Kenneth L, Ruiz, Jaime, Belk, Keith E, Morley, Paul S, Boucher, Christina

“…Antimicrobial resistance has become an imminent concern for public health. As methods for detection and characterization of antimicrobial resistance move from…”
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Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca by Oladeinde, Adelumola, Cook, Kimberly, Lakin, Steven M, Woyda, Reed, Abdo, Zaid, Looft, Torey, Herrington, Kyler, Zock, Gregory, Lawrence, Jodie Plumblee, Thomas, 4th, Jesse C, Beaudry, Megan S, Glenn, Travis

“…The chicken gastrointestinal tract harbors microorganisms that play a role in the health and disease status of the host. The cecum is the part of the gut that…”
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West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses by Fauver, Joseph R, Grubaugh, Nathan D, Krajacich, Benjamin J, Weger-Lucarelli, James, Lakin, Steven M, Fakoli, Lawrence S, Bolay, Fatorma K, Diclaro, Joseph W, Dabiré, Kounbobr Roch, Foy, Brian D, Brackney, Doug E, Ebel, Gregory D, Stenglein, Mark D

“…Abstract Anopheles gambiae are a major vector of malaria in sub-Saharan Africa. Viruses that naturally infect these mosquitoes may impact their physiology and…”
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Domestic pigs are susceptible to experimental infection with non-human primate-derived Reston virus without the need for adaptation by Lewis, Charles E., Pinette, Mathieu M., Lakin, Steven M., Smith, Greg, Fisher, Mathew, Moffat, Estella, Embury-Hyatt, Carissa, Pickering, Brad S.

“…Domestic pigs are a critical component of the food supply and one of the most commonly raised production animals. Pork consumption has driven the…”
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Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems by Rovira, Pablo, McAllister, Tim, Lakin, Steven M., Cook, Shaun R., Doster, Enrique, Noyes, Noelle R., Weinroth, Maggie D., Yang, Xiang, Parker, Jennifer K., Boucher, Christina, Booker, Calvin W., Woerner, Dale R., Belk, Keith E., Morley, Paul S.

“…Metagenomic investigations have the potential to provide unprecedented insights into microbial ecologies, such as those relating to antimicrobial resistance…”
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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent by Zaheer, Rahat, Lakin, Steven M, Polo, Rodrigo Ortega, Cook, Shaun R, Larney, Francis J, Morley, Paul S, Booker, Calvin W, Hannon, Sherry J, Van Domselaar, Gary, Read, Ron R, McAllister, Tim A

“…Comparative knowledge of microbiomes and resistomes across environmental interfaces between animal production systems and urban settings is lacking. In this…”
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Rapid Detection and Quick Characterization of African Swine Fever Virus Using the VolTRAX Automated Library Preparation Platform by O'Donnell, Vivian, Pierce, Jim L, Osipenko, Oleg, Xu, Lizhe, Berninger, Amy, Lakin, Steven M, Barrette, Roger W, Gladue, Douglas P, Faburay, Bonto

“…African swine fever virus (ASFV) is the causative agent of a severe and highly contagious viral disease affecting domestic and wild swine. The current ASFV…”
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Demographic and histopathologic features of dogs with abnormally high concentrations of hepatic copper by Ullal, Tarini Vedantham, Lakin, Steven, Gallagher, Brooke, Sbardellati, Nick, Abdo, Zaid, Twedt, David C.

“…Background Copper associated hepatopathy (CAH) has become an important and prevalent disease since the 1990's, coincidental with changes in copper (Cu) content…”
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Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens by Oladeinde, Adelumola, Abdo, Zaid, Zwirzitz, Benjamin, Woyda, Reed, Lakin, Steven M, Press, Maximilian O, Cox, Nelson A, Thomas, 4th, Jesse C, Looft, Torey, Rothrock, Jr, Michael J, Zock, Gregory, Plumblee Lawrence, Jodie, Cudnik, Denice, Ritz, Casey, Aggrey, Samuel E, Liachko, Ivan, Grove, Jonas R, Wiersma, Crystal

“…Fostering a "balanced" gut microbiome through the administration of beneficial microbes that can competitively exclude pathogens has gained a lot of attention…”
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Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period by Doster, Enrique, Rovira, Pablo, Noyes, Noelle R, Burgess, Brandy A, Yang, Xiang, Weinroth, Margaret D, Lakin, Steven M, Dean, Christopher J, Linke, Lyndsey, Magnuson, Roberta, Jones, Kenneth I, Boucher, Christina, Ruiz, Jamie, Belk, Keith E, Morley, Paul S

“…The objective was to examine effects of treating commercial beef feedlot cattle with therapeutic doses of tulathromycin, a macrolide antimicrobial drug, on…”
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Experimental Infection of Bundibugyo Virus in Domestic Swine Leads to Viral Shedding with Evidence of Intraspecies Transmission by Lewis, Charles E., Pinette, Mathieu M., Lakin, Steven M., Smith, Greg, Fisher, Mathew, Moffat, Estella, Embury-Hyatt, Carissa, Pickering, Brad S.

“…The Ebolavirus genus contains several of the deadliest zoonotic viruses known. One of these, Bundibugyo virus (BDBV), has been the causative agent of two…”
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Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics by Huebner, Katherine L., Martin, Jennifer N., Weissend, Carla J., Holzer, Katlyn L., Parker, Jennifer K., Lakin, Steven M., Doster, Enrique, Weinroth, Margaret D., Abdo, Zaid, Woerner, Dale R., Metcalf, Jessica L., Geornaras, Ifigenia, Bryant, Tony C., Morley, Paul S., Belk, Keith E.

“…Liver abscesses in feedlot cattle form secondary to high concentrate feeds and rumen acidosis. Antimicrobial drugs are commonly included in cattle feed for…”
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Direct RNA Sequencing of Foot-and-mouth Disease Virus Genome Using a Flongle on MinION by Xu, Lizhe, Berninger, Amy, Lakin, Steven M, O'Donnell, Vivian, Pierce, Jim L, Pauszek, Steven J, Barrette, Roger W, Faburay, Bonto

“…Aphthovirus, within the family Picornaviridae. Early detection and characterization of FMDV strains are key factors to control new outbreaks and prevent the…”
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Co-Circulating Monkeypox and Swinepox Viruses, Democratic Republic of the Congo, 2022 by Kalonji, Thierry, Malembi, Emile, Matela, Jean Paul, Likafi, Toutou, Kinganda-Lusamaki, Eddy, Vakaniaki, Emmanuel Hasivirwe, Hoff, Nicole A, Aziza, Amuri, Muyembe, Francisca, Kabamba, Joelle, Cooreman, Tine, Nguete, Béatrice, Witte, Danae, Ayouba, Ahidjo, Fernandez-Nuñez, Nicolas, Roge, Stijn, Peeters, Martine, Merritt, Sydney, Ahuka-Mundeke, Steve, Delaporte, Eric, Pukuta, Elisabeth, Mariën, Joachim, Bangwen, Eugene, Lakin, Steven, Lewis, Charles, Doty, Jeffrey B, Liesenborghs, Laurens, Hensley, Lisa E, McCollum, Andrea, Rimoin, Anne W, Muyembe-Tamfum, Jean Jacques, Shongo, Robert, Kaba, Didine, Mbala-Kingebeni, Placide

“…In September 2022, deaths of pigs manifesting pox-like lesions caused by swinepox virus were reported in Tshuapa Province, Democratic Republic of the Congo…”
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Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing by Noyes, Noelle R, Weinroth, Maggie E, Parker, Jennifer K, Dean, Chris J, Lakin, Steven M, Raymond, Robert A, Rovira, Pablo, Doster, Enrique, Abdo, Zaid, Martin, Jennifer N, Jones, Kenneth L, Ruiz, Jaime, Boucher, Christina A, Belk, Keith E, Morley, Paul S

“…Shotgun metagenomic sequencing is increasingly utilized as a tool to evaluate ecological-level dynamics of antimicrobial resistance and virulence, in…”
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Coding-complete genome sequences of rabbit hemorrhagic disease virus type 2 detected in 2023 in Washington State indicate a divergent incursion into the United States by Pauszek, Steven J, Waters, Kaitlyn, Mohamed, Fawzi, Lakin, Steven M, Moran, Karen, Minor, Montariel, Creekmore, Lynn, Makhdoomi, Muzafar, Faburay, Bonto

“…Three rabbit hemorrhagic disease virus type 2 (RHDV2) coding-complete genome sequences were obtained from domestic and wild rabbits in Washington State in June…”
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Whole Genome Sequencing Shows that African Swine Fever Virus Genotype IX Is Still Circulating in Domestic Pigs in All Regions of Uganda by Okwasiimire, Rodney, Flint, Joseph F, Kayaga, Edrine B, Lakin, Steven, Pierce, Jim, Barrette, Roger W, Faburay, Bonto, Ndoboli, Dickson, Ekakoro, John E, Wampande, Eddie M, Havas, Karyn A

“…Blood samples were collected from pigs at six abattoirs in the Kampala, Uganda metropolitan area from May 2021 through June 2022, and tested for African swine…”
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Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg by Oladeinde, Adelumola, Abdo, Zaid, Press, Maximilian O, Cook, Kimberly, Cox, Nelson A, Zwirzitz, Benjamin, Woyda, Reed, Lakin, Steven M, Thomas, 4th, Jesse C, Looft, Torey, Cosby, Douglas E, Hinton, Jr, Arthur, Guard, Jean, Line, Eric, Rothrock, Michael J, Berrang, Mark E, Herrington, Kyler, Zock, Gregory, Plumblee Lawrence, Jodie, Cudnik, Denice, House, Sandra, Ingram, Kimberly, Lariscy, Leah, Wagner, Martin, Aggrey, Samuel E, Chai, Lilong, Ritz, Casey

“…The overuse and misuse of antibiotics in clinical settings and in food production have been linked to the increased prevalence and spread of antimicrobial…”
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Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences by Lakin, Steven M., Kuhnle, Alan, Alipanahi, Bahar, Noyes, Noelle R., Dean, Chris, Muggli, Martin, Raymond, Rob, Abdo, Zaid, Prosperi, Mattia, Belk, Keith E., Morley, Paul S., Boucher, Christina

“…The characterization of antimicrobial resistance genes from high-throughput sequencing data has become foundational in public health research and regulation…”
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