Search Results - "LYONS, ERIC"

How to usefully compare homologous plant genes and chromosomes as DNA sequences by Lyons, Eric, Freeling, Michael

“…There are four sequenced and publicly available plant genomes to date. With many more slated for completion, one challenge will be to use comparative genomic…”
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The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences by Merchant, Nirav, Lyons, Eric, Goff, Stephen, Vaughn, Matthew, Ware, Doreen, Micklos, David, Antin, Parker

“…The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data…”
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Evaluation of the impact of photoperiod and light intensity on decreasing days to maturity in winter wheat by Ficht, Alexandra, Bruch, Austin, Rajcan, Istvan, Pozniak, Curtis, Lyons, Eric M.

“…The development and improvement of crop cultivars are necessary to meet the demands of the growing global population. The ability to decrease the generation…”
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SynMap2 and SynMap3D: web-based whole-genome synteny browsers by Haug-Baltzell, Asher, Stephens, Sean A, Davey, Sean, Scheidegger, Carlos E, Lyons, Eric

“…Current synteny visualization tools either focus on small regions of sequence and do not illustrate genome-wide trends, or are complicated to use and create…”
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A One-Dimensional Light Detection and Ranging Array Scanner for Mapping Turfgrass Quality by Rosenfield, Arthur, Ficht, Alexandra, Lyons, Eric M., Gharabaghi, Bahram

“…The turfgrass industry supports golf courses, sports fields, and the landscaping and lawn care industries worldwide. Identifying the problem spots in turfgrass…”
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Wild tobacco genomes reveal the evolution of nicotine biosynthesis by Xu, Shuqing, Brockmöller, Thomas, Navarro-Quezada, Aura, Kuhl, Heiner, Gase, Klaus, Ling, Zhihao, Zhou, Wenwu, Kreitzer, Christoph, Stanke, Mario, Tang, Haibao, Lyons, Eric, Pandey, Priyanka, Pandey, Shree P., Timmermann, Bernd, Gaquerel, Emmanuel, Baldwin, Ian T.

“…Nicotine, the signature alkaloid of Nicotiana species responsible for the addictive properties of human tobacco smoking, functions as a defensive neurotoxin…”
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Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum by VanBuren, Robert, Bryant, Doug, Edger, Patrick P., Tang, Haibao, Burgess, Diane, Challabathula, Dinakar, Spittle, Kristi, Hall, Richard, Gu, Jenny, Lyons, Eric, Freeling, Michael, Bartels, Dorothea, Ten Hallers, Boudewijn, Hastie, Alex, Michael, Todd P., Mockler, Todd C.

“…Oropetium thomaeum is a resurrection plant that can survive extreme water stress through desiccation to complete dryness, providing a model for drought…”
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cis-Inhibition of Notch by Endogenous Delta Biases the Outcome of Lateral Inhibition by Miller, Adam C., Lyons, Eric L., Herman, Tory G.

“…Lateral inhibition mediated by Delta/Notch (Dl/N) signaling is used throughout development to limit the number of initially equivalent cells that adopt a…”
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Comparative analyses suggest a link between mRNA splicing, stability, and RNA covalent modifications in flowering plants by Palos, Kyle, Nelson Dittrich, Anna C, Lyons, Eric H, Gregory, Brian D, Nelson, Andrew D L

“…In recent years, covalent modifications on RNA nucleotides have emerged as pivotal moieties influencing the structure, function, and regulatory processes of…”
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Sorghum bicolor genome and the diversification of grasses by Paterson, Andrew H, Bowers, John E, Bruggmann, Remy, Dubchak, Inna, Grimwood, Jane, Gundlach, Heidrun, Haberer, Georg, Hellsten, Uffe, Mitros, Therese, Poliakov, Alexander, Schmutz, Jeremy, Spannagl, Manuel, Tang, Haibao, Wang, Xiyin, Wicker, Thomas, Ware, Doreen

“…Sorghum, an African grass related to sugar cane and maize, is grown for food, feed, fibre and fuel. We present an initial analysis of the 730-megabase Sorghum…”
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Screening synteny blocks in pairwise genome comparisons through integer programming by Tang, Haibao, Lyons, Eric, Pedersen, Brent, Schnable, James C, Paterson, Andrew H, Freeling, Michael

“…It is difficult to accurately interpret chromosomal correspondences such as true orthology and paralogy due to significant divergence of genomes from a common…”
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization by Emery, Marianne, Willis, M Madeline S, Hao, Yue, Barry, Kerrie, Oakgrove, Khouanchy, Peng, Yi, Schmutz, Jeremy, Lyons, Eric, Pires, J Chris, Edger, Patrick P, Conant, Gavin C

“…Polyploidy is increasingly seen as a driver of both evolutionary innovation and ecological success. One source of polyploid organisms' successes may be their…”
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Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs by Woodhouse, Margaret R, Schnable, James C, Pedersen, Brent S, Lyons, Eric, Lisch, Damon, Subramaniam, Shabarinath, Freeling, Michael

“…Previous work in Arabidopsis showed that after an ancient tetraploidy event, genes were preferentially removed from one of the two homeologs, a process known…”
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Genome-wide analysis of syntenic gene deletion in the grasses by Schnable, James C, Freeling, Michael, Lyons, Eric

“…The grasses, Poaceae, are one of the largest and most successful angiosperm families. Like many radiations of flowering plants, the divergence of the major…”
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A Novel Treatment Protects Chlorella at Commercial Scale from the Predatory Bacterium Vampirovibrio chlorellavorus by Ganuza, Eneko, Sellers, Charles E, Bennett, Braden W, Lyons, Eric M, Carney, Laura T

“…The predatory bacterium, Vampirovibrio chlorellavorus, can destroy a Chlorella culture in just a few days, rendering an otherwise robust algal crop into a…”
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An ALMA and MagAO Study of the Substellar Companion GQ Lup B by Wu, Ya-Lin, Sheehan, Patrick D., Males, Jared R., Close, Laird M., Morzinski, Katie M., Teske, Johanna K., Haug-Baltzell, Asher, Merchant, Nirav, Lyons, Eric

“…Multi-wavelength observations provide a complementary view of the formation of young, directly imaged planet-mass companions. We report the ALMA 1.3 mm and…”
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Interdependent regulation of stereotyped and stochastic photoreceptor fates in the fly eye by Miller, Adam C., Urban, Elizabeth A., Lyons, Eric L., Herman, Tory G., Johnston, Robert J.

“…Diversification of neuronal subtypes often requires stochastic gene regulatory mechanisms. How stochastically expressed transcription factors interact with…”
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The Agricultural Genome to Phenome Initiative (AG2PI): creating a shared vision across crop and livestock research communities by Tuggle, Christopher K, Clarke, Jennifer, Dekkers, Jack C M, Ertl, David, Lawrence-Dill, Carolyn J, Lyons, Eric, Murdoch, Brenda M, Scott, Nicole M, Schnable, Patrick S

“…Towards these ends, this AG2PI project is organizing virtual field days, conferences, training workshops, and awarding seed grants to conceive new insights…”
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Using genomic sequencing for classical genetics in E. coli K12 by Lyons, Eric, Freeling, Michael, Kustu, Sydney, Inwood, William

“…We here develop computational methods to facilitate use of 454 whole genome shotgun sequencing to identify mutations in Escherichia coli K12. We had Roche…”
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A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate by Foley, Shawn W., Gosai, Sager J., Wang, Dongxue, Selamoglu, Nur, Sollitti, Amelia C., Köster, Tino, Steffen, Alexander, Lyons, Eric, Daldal, Fevzi, Garcia, Benjamin A., Staiger, Dorothee, Deal, Roger B., Gregory, Brian D.

“…The Arabidopsis thaliana root epidermis is comprised of two cell types, hair and nonhair cells, which differentiate from the same precursor. Although the…”
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