Search Results - "LIU, Tommy F"

Web Resources for HIV Type 1 Genotypic-Resistance Test Interpretation by Liu, Tommy F., Shafer, Robert W.

“…Interpreting the results of plasma human immunodeficiency virus type 1 (HIV-1) genotypic drug-resistance tests is one of the most difficult tasks facing…”
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Drug resistance mutations for surveillance of transmitted HIV-1 drug-resistance: 2009 update by Bennett, Diane E, Camacho, Ricardo J, Otelea, Dan, Kuritzkes, Daniel R, Fleury, Hervé, Kiuchi, Mark, Heneine, Walid, Kantor, Rami, Jordan, Michael R, Schapiro, Jonathan M, Vandamme, Anne-Mieke, Sandstrom, Paul, Boucher, Charles A B, van de Vijver, David, Rhee, Soo-Yon, Liu, Tommy F, Pillay, Deenan, Shafer, Robert W

“…Programs that monitor local, national, and regional levels of transmitted HIV-1 drug resistance inform treatment guidelines and provide feedback on the success…”
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Automating HIV Drug Resistance Genotyping with RECall, a Freely Accessible Sequence Analysis Tool by WOODS, Conan K, BRUMME, Chanson J, LIU, Tommy F, CHUI, Celia K. S, CHU, Anna L, WYNHOVEN, Brian, HALL, Tom A, TREVINO, Christina, SHAFER, Robert W, HARRIGAN, P. Richard

“…Article Usage Stats Services JCM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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The HIVdb system for HIV-1 genotypic resistance interpretation by Tang, Michele W, Liu, Tommy F, Shafer, Robert W

“…The Stanford HIV Drug Resistance Database hosts a freely available online genotypic resistance interpretation system called HIVdb to help clinicians and…”
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Non-nucleoside reverse transcriptase inhibitor (NNRTI) cross-resistance: implications for preclinical evaluation of novel NNRTIs and clinical genotypic resistance testing by Melikian, George L, Rhee, Soo-Yon, Varghese, Vici, Porter, Danielle, White, Kirsten, Taylor, Jonathan, Towner, William, Troia, Paolo, Burack, Jeffrey, Dejesus, Edwin, Robbins, Gregory K, Razzeca, Kristin, Kagan, Ron, Liu, Tommy F, Fessel, W Jeffrey, Israelski, Dennis, Shafer, Robert W

“…The introduction of two new non-nucleoside reverse transcriptase inhibitors (NNRTIs) in the past 5 years and the identification of novel NNRTI-associated…”
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The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance by Gifford, Robert J., Liu, Tommy F., Rhee, Soo-Yon, Kiuchi, Mark, Hue, Stephane, Pillay, Deenan, Shafer, Robert W.

“…The calibrated population resistance (CPR) tool is a web-accessible program for performing standardized genotypic estimation of transmitted HIV-1 drug…”
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Trends in Genotypic HIV-1 Antiretroviral Resistance between 2006 and 2012 in South African Patients Receiving First- and Second-Line Antiretroviral Treatment Regimens by Van Zyl, Gert U, Liu, Tommy F, Claassen, Mathilda, Engelbrecht, Susan, de Oliveira, Tulio, Preiser, Wolfgang, Wood, Natasha T, Travers, Simon, Shafer, Robert W

“…South Africa's national antiretroviral (ARV) treatment program expanded in 2010 to include the nucleoside reverse transcriptase (RT) inhibitors (NRTI)…”
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Natural variation of HIV-1 group M integrase: implications for a new class of antiretroviral inhibitors by Rhee, Soo-Yon, Liu, Tommy F, Kiuchi, Mark, Zioni, Rafael, Gifford, Robert J, Holmes, Susan P, Shafer, Robert W

“…HIV-1 integrase is the third enzymatic target of antiretroviral (ARV) therapy. However, few data have been published on the distribution of naturally occurring…”
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Similar prevalence of low-abundance drug-resistant variants in treatment-naive patients with genotype 1a and 1b hepatitis C virus infections as determined by ultradeep pyrosequencing by Margeridon-Thermet, Severine, Le Pogam, Sophie, Li, Lewyn, Liu, Tommy F, Shulman, Nancy, Shafer, Robert W, Najera, Isabel

“…Hepatitis C virus (HCV) variants that confer resistance to direct-acting-antiviral agents (DAA) have been detected by standard sequencing technology in…”
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Minority Human Immunodeficiency Virus Type 1 Variants in Antiretroviral-Naive Persons with Reverse Transcriptase Codon 215 Revertant Mutations by MITSUYA, Yumi, VARGHESE, Vici, SHAFER, Robert W, CHUNLIN WANG, LIU, Tommy F, HOLMES, Susan P, JAYAKUMAR, Prerana, GHARIZADEH, Baback, RONAGHI, Mostafa, KLEIN, Daniel, FESSEL, W. Jeffrey

“…Article Usage Stats Services JVI Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Prototypical Recombinant Multi-Protease-Inhibitor-Resistant Infectious Molecular Clones of Human Immunodeficiency Virus Type 1 by VARGHESE, Vici, MITSUYA, Yumi, FESSEL, W. Jeffrey, LIU, Tommy F, MELIKIAN, George L, KATZENSTEIN, David A, SCHIFFER, Celia A, HOLMES, Susan P, SHAFER, Robert W

“…OA  Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Low-Level Persistence of Drug Resistance Mutations in Hepatitis B Virus-Infected Subjects with a Past History of Lamivudine Treatment by Margeridon-Thermet, Severine, Svarovskaia, Evguenia S, Babrzadeh, Farbod, Martin, Ross, Liu, Tommy F, Pacold, Mary, Reuman, Elizabeth C, Holmes, Susan P, Borroto-Esoda, Katyna, Shafer, Robert W

“…Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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HIV-1 subtype B protease and reverse transcriptase amino acid covariation by Rhee, Soo-Yon, Liu, Tommy F, Holmes, Susan P, Shafer, Robert W

“…Despite the high degree of HIV-1 protease and reverse transcriptase (RT) mutation in the setting of antiretroviral therapy, the spectrum of possible virus…”
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Predictive Value of HIV-1 Genotypic Resistance Test Interpretation Algorithms by Rhee, Soo-Yon, Fessel, W. Jeffrey, Liu, Tommy F., Marlowe, Natalia M., Rowland, Charles M., Rode, Richard A., Vandamme, Anne-Mieke, Van Laethem, Kristel, Brun-Vezinet, Françoise, Calvez, Vincent, Taylor, Jonathan, Hurley, Leo, Horberg, Michael, Shafer, Robert W.

“…Background Interpreting human immunodeficiency virus type 1 (HIV-1) genotypic drug-resistance test results is challenging for clinicians treating…”
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Nonpolymorphic Human Immunodeficiency Virus Type 1 Protease and Reverse Transcriptase Treatment-Selected Mutations by SHAHRIAR, Rajin, RHEE, Soo-Yon, LIU, Tommy F, FESSEL, W. Jeffrey, SCARSELLA, Anthony, TOWNER, William, HOLMES, Susan P, ZOLOPA, Andrew R, SHAFER, Robert W

“…Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Prevalence of Darunavir Resistance-Associated Mutations: Patterns of Occurrence and Association with Past Treatment by Mitsuya, Yumi, Liu, Tommy F., Rhee, Soo-Yon, Fessel, W. Jeffrey, Shafer, Robert W.

“…Eleven protease mutations have been associated with reduced susceptibility to darunavir (DRV). We examined the prevalence and covariates of these mutations in…”
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Standardized representation, visualization and searchable repository of antiretroviral treatment-change episodes by Rhee, Soo-Yon, Blanco, Jose Luis, Liu, Tommy F, Pere, Iñaki, Kaiser, Rolf, Zazzi, Maurizio, Incardona, Francesca, Towner, William, Gatell, Josep Maria, De Luca, Andrea, Fessel, W Jeffrey, Shafer, Robert W

“…To identify the determinants of successful antiretroviral (ARV) therapy, researchers study the virological responses to treatment-change episodes (TCEs)…”
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Hepatitis B virus reverse transcriptase sequence variant database for sequence analysis and mutation discovery by Rhee, Soo-Yon, Margeridon-Thermet, Severine, Nguyen, Mindie H., Liu, Tommy F., Kagan, Ron M., Beggel, Bastian, Verheyen, Jens, Kaiser, Rolf, Shafer, Robert W.

“…Drug resistance resulting from reverse transcriptase (RT) mutations is one of the main obstacles to successful hepatitis B virus (HBV) therapy. Indeed, HBV…”
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Collinearity of protease mutations in HIV-1 samples with high-level protease inhibitor class resistance by Babrzadeh, Farbod, Varghese, Vici, Pacold, Mary, Liu, Tommy F, Nyrén, Pål, Schiffer, Celia, Fessel, W Jeffrey, Shafer, Robert W

“…To determine whether pan-protease inhibitor (PI)-resistant virus populations are composed predominantly of viruses with resistance to all PIs or of diverse…”
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HIV-1 integrase sequence variability in antiretroviral naïve patients and in triple-class experienced patients subsequently treated with raltegravir by Varghese, Vici, Liu, Tommy F, Rhee, Soo-Yon, Libiran, Paolo, Trevino, Christina, Fessel, W Jeffrey, Shafer, Robert W

“…Viruses were sequenced from 75 antiretroviral therapy (ARV)-naïve and from 75 ARV-treated patients who subsequently received a raltegravir-containing regimen…”
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