Search Results - "LIPTON, Mary S"

Multiomics resolution of molecular events during a day in the life of Chlamydomonas by Strenkert, Daniela, Schmollinger, Stefan, Gallaher, Sean D., Salomé, Patrice A., Purvine, Samuel O., Nicora, Carrie D., Mettler-Altmann, Tabea, Soubeyrand, Eric, Weber, Andreas P. M., Lipton, Mary S., Basset, Gilles J., Merchant, Sabeeha S.

“…The unicellular green alga Chlamydomonas reinhardtii displays metabolic flexibility in response to a changing environment. We analyzed expression patterns of…”
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Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla by Wrighton, Kelly C., Thomas, Brian C., Sharon, Itai, Miller, Christopher S., Castelle, Cindy J., VerBerkmoes, Nathan C., Wilkins, Michael J., Hettich, Robert L., Lipton, Mary S., Williams, Kenneth H., Long, Philip E., Banfield, Jillian F.

“…BD1-5, OP11, and OD1 bacteria have been widely detected in anaerobic environments, but their metabolisms remain unclear owing to lack of cultivated…”
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Decrypting bacterial polyphenol metabolism in an anoxic wetland soil by McGivern, Bridget B., Tfaily, Malak M., Borton, Mikayla A., Kosina, Suzanne M., Daly, Rebecca A., Nicora, Carrie D., Purvine, Samuel O., Wong, Allison R., Lipton, Mary S., Hoyt, David W., Northen, Trent R., Hagerman, Ann E., Wrighton, Kelly C.

“…Microorganisms play vital roles in modulating organic matter decomposition and nutrient cycling in soil ecosystems. The enzyme latch paradigm posits microbial…”
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Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics by Cao, Bin, Shi, Liang, Brown, Roslyn N., Xiong, Yijia, Fredrickson, Jim K., Romine, Margaret F., Marshall, Matthew J., Lipton, Mary S., Beyenal, Haluk

“…Summary The composition of extracellular polymeric substances (EPS) from Shewanella sp. HRCR‐1 biofilms was investigated using infrared spectroscopy and…”
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Establishing the proteome of normal human cerebrospinal fluid by Schutzer, Steven E, Liu, Tao, Natelson, Benjamin H, Angel, Thomas E, Schepmoes, Athena A, Purvine, Samuel O, Hixson, Kim K, Lipton, Mary S, Camp, David G, Coyle, Patricia K, Smith, Richard D, Bergquist, Jonas

“…Knowledge of the entire protein content, the proteome, of normal human cerebrospinal fluid (CSF) would enable insights into neurologic and psychiatric…”
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Hi-C metagenome sequencing reveals soil phage–host interactions by Wu, Ruonan, Davison, Michelle R., Nelson, William C., Smith, Montana L., Lipton, Mary S., Jansson, Janet K., McClure, Ryan S., McDermott, Jason E., Hofmockel, Kirsten S.

“…Bacteriophages are abundant in soils. However, the majority are uncharacterized, and their hosts are unknown. Here, we apply high-throughput chromosome…”
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The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial by Suskind, David L, Lee, Dale, Kim, Young-Mo, Wahbeh, Ghassan, Singh, Namita, Braly, Kimberly, Nuding, Mason, Nicora, Carrie D, Purvine, Samuel O, Lipton, Mary S, Jansson, Janet K, Nelson, William C

“…Crohn's disease (CD) is a chronic inflammatory intestinal disorder associated with intestinal dysbiosis. Diet modulates the intestinal microbiome and therefore…”
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Interactions between microbial diversity and substrate chemistry determine the fate of carbon in soil by Raczka, Nanette C., Piñeiro, Juan, Tfaily, Malak M., Chu, Rosalie K., Lipton, Mary S., Pasa-Tolic, Ljiljana, Morrissey, Ember, Brzostek, Edward

“…Microbial decomposition drives the transformation of plant-derived substrates into microbial products that form stable soil organic matter (SOM). Recent…”
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Widespread polycistronic gene expression in green algae by Gallaher, Sean D., Craig, Rory J., Ganesan, Iniyan, Purvine, Samuel O., McCorkle, Sean R., Grimwood, Jane, Strenkert, Daniela, Davidi, Lital, Roth, Melissa S., Jeffers, Tim L., Lipton, Mary S., Niyogi, Krishna K., Schmutz, Jeremy, Theg, Steven M., Blaby-Haas, Crysten E., Merchant, Sabeeha S.

“…Polycistronic gene expression, common in prokaryotes, was thought to be extremely rare in eukaryotes. The development of long-read sequencing of full-length…”
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New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11 by Solden, Lindsey M, Hoyt, David W, Collins, William B, Plank, Johanna E, Daly, Rebecca A, Hildebrand, Erik, Beavers, Timothy J, Wolfe, Richard, Nicora, Carrie D, Purvine, Sam O, Carstensen, Michelle, Lipton, Mary S, Spalinger, Donald E, Firkins, Jeffrey L, Wolfe, Barbara A, Wrighton, Kelly C

“…Ruminants have co-evolved with their gastrointestinal microbial communities that digest plant materials to provide energy for the host. Some arctic and boreal…”
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Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer by Wrighton, Kelly C, Castelle, Cindy J, Wilkins, Michael J, Hug, Laura A, Sharon, Itai, Thomas, Brian C, Handley, Kim M, Mullin, Sean W, Nicora, Carrie D, Singh, Andrea, Lipton, Mary S, Long, Philip E, Williams, Kenneth H, Banfield, Jillian F

“…Fermentation-based metabolism is an important ecosystem function often associated with environments rich in organic carbon, such as wetlands, sewage sludge and…”
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Ultra-sensitive isotope probing to quantify activity and substrate assimilation in microbiomes by Kleiner, Manuel, Kouris, Angela, Violette, Marlene, D'Angelo, Grace, Liu, Yihua, Korenek, Abigail, Tolić, Nikola, Sachsenberg, Timo, McCalder, Janine, Lipton, Mary S, Strous, Marc

“…Stable isotope probing (SIP) approaches are a critical tool in microbiome research to determine associations between species and substrates, as well as the…”
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Specialization in a Nitrogen-Fixing Symbiosis: Proteome Differences Between Sinorhizobium medicae Bacteria and Bacteroids by Yurgel, Svetlana N, Qu, Yi, Rice, Jennifer T, Ajeethan, Nivethika, Zink, Erika M, Brown, Joseph M, Purvine, Sam, Lipton, Mary S, Kahn, Michael L

“…Using tandem mass spectrometry (MS/MS), we analyzed the proteome of WSM419 growing as free-living cells and in symbiosis with . In all, 3,215 proteins were…”
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Identification and Characterization of MtoA: A Decaheme c-Type Cytochrome of the Neutrophilic Fe(II)-Oxidizing Bacterium Sideroxydans lithotrophicus ES-1 by Liu, Juan, Wang, Zheming, Belchik, Sara M, Edwards, Marcus J, Liu, Chongxuan, Kennedy, David W, Merkley, Eric D, Lipton, Mary S, Butt, Julea N, Richardson, David J, Zachara, John M, Fredrickson, James K, Rosso, Kevin M, Shi, Liang

“…The Gram-negative bacterium Sideroxydans lithotrophicus ES-1 (ES-1) grows on FeCO(3) or FeS at oxic-anoxic interfaces at circumneutral pH, and the…”
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Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem by Solden, Lindsey M., Naas, Adrian E., Roux, Simon, Daly, Rebecca A., Collins, William B., Nicora, Carrie D., Purvine, Sam O., Hoyt, David W., Schückel, Julia, Jørgensen, Bodil, Willats, William, Spalinger, Donald E., Firkins, Jeffrey L., Lipton, Mary S., Sullivan, Matthew B., Pope, Phillip B., Wrighton, Kelly C.

“…Because of their agricultural value, there is a great body of research dedicated to understanding the microorganisms responsible for rumen carbon degradation…”
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Membrane Stresses Induced by Overproduction of Free Fatty Acids in Escherichia coli by LENNEN, Rebecca M, KRUZIKI, Max A, PFLEGER, Brian F, KUMAR, Kritika, ZINKEL, Robert A, BURNUM, Kristin E, LIPTON, Mary S, HOOVER, Spencer W, RANATUNGA, Don R, WITTKOPP, Tyler M, MARNER, Wesley D

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea by Sowell, Sarah M, Wilhelm, Larry J, Norbeck, Angela D, Lipton, Mary S, Nicora, Carrie D, Barofsky, Douglas F, Carlson, Craig A, Smith, Richard D, Giovanonni, Stephen J

“…The northwestern Sargasso Sea undergoes annual cycles of productivity with increased production in spring corresponding to periods of upwelling, and…”
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Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation by Cao, Li, Tolić, Nikola, Qu, Yi, Meng, Da, Zhao, Rui, Zhang, Qibin, Moore, Ronald J., Zink, Erika M., Lipton, Mary S., Paša-Tolić, Ljiljana, Wu, Si

“…Simultaneous elucidation of the glycan structure and the glycosylation site are needed to reveal the biological function of protein glycosylation. In this…”
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Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85 by Burnet, Meagan C, Dohnalkova, Alice C, Neumann, Anthony P, Lipton, Mary S, Smith, Richard D, Suen, Garret, Callister, Stephen J

“…Fibrobacter succinogenes S85 is an anaerobic non-cellulosome utilizing cellulolytic bacterium originally isolated from the cow rumen microbial community…”
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Targeted curation of the gut microbial gene content modulating human cardiovascular disease by Borton, Mikayla A, Shaffer, Michael, Hoyt, David W, Jiang, Ruisheng, Ellenbogen, Jared B, Purvine, Samuel, Nicora, Carrie D, Eder, Elizabeth K, Wong, Allison R, Smulian, A George, Lipton, Mary S, Krzycki, Joseph A, Wrighton, Kelly C

“…One of the most-cited examples of the gut microbiome modulating human disease is the microbial metabolism of quaternary amines from protein-rich foods…”
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