Search Results - "LÖytynoja, A."

SOAP, cleaning multiple alignments from unstable blocks by Löytynoja, A., Milinkovitch, M. C.

“…SOAP is a stand-alone, multi-platform program to test the stability of a multiple alignment of molecular sequences. Availability: The software is available…”
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Matrilinear phylogeography of Atlantic salmon (Salmo salar L.) in Europe and postglacial colonization of the Baltic Sea area by Nilsson, J., Gross, R., Asplund, T., Dove, O., Jansson, H., Kelloniemi, J., Kohlmann, K., LÖytynoja, A., Nielsen, E. E., Paaver, T., Primmer, C. R., Titov, S., VasemÄgi, A., Veselov, A., Öst, T., Lumme, J.

“…Sixty‐four samples from 46 salmon populations totalling 2369 specimens were used for polymerase chain reaction–restriction fragment length polymorphism…”
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Molecular Phylogenetic Analyses of the Mitochondrial ADP-ATP Carriers: The Plantae/Fungi/Metazoa Trichotomy Revisited by Löytynoja, Ari, Milinkovitch, Michel C.

“…We investigated the basal phylogeny of eukaryotes through analyses of sequences from the ADP-ATP mitochondrial carrier, a transmembrane protein that is stable…”
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An Algorithm for Progressive Multiple Alignment of Sequences with Insertions by Löytynoja, Ari, Goldman, Nick, Siegmund, David O.

“…Dynamic programming algorithms guarantee to find the optimal alignment between two sequences. For more than a few sequences, exact algorithms become…”
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A hidden Markov model for progressive multiple alignment by Löytynoja, Ari, Milinkovitch, Michel C.

“…Motivation: Progressive algorithms are widely used heuristics for the production of alignments among multiple nucleic-acid or protein sequences. Probabilistic…”
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