Search Results - "Kyrpides, N."

IMG: the integrated microbial genomes database and comparative analysis system by Markowitz, Victor M., Chen, I-Min A., Palaniappan, Krishna, Chu, Ken, Szeto, Ernest, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Huang, Jinghua, Williams, Peter, Huntemann, Marcel, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.

“…The Integrated Microbial Genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive…”
Get full text

Metagenomic insights into the taxonomy, function, and dysbiosis of prokaryotic communities in octocorals by Keller-Costa, T, Lago-Lestón, A, Saraiva, J P, Toscan, R, Silva, S G, Gonçalves, J, Cox, C J, Kyrpides, N, Nunes da Rocha, U, Costa, R

“…In octocorals (Cnidaria Octocorallia), the functional relationship between host health and its symbiotic consortium has yet to be determined. Here, we employed…”
Get full text

Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 by Gerdes, S Y, Scholle, M D, Campbell, J W, Balázsi, G, Ravasz, E, Daugherty, M D, Somera, A L, Kyrpides, N C, Anderson, I, Gelfand, M S, Bhattacharya, A, Kapatral, V, D'Souza, M, Baev, M V, Grechkin, Y, Mseeh, F, Fonstein, M Y, Overbeek, R, Barabási, A-L, Oltvai, Z N, Osterman, A L

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
Get full text

Protein interaction maps for complete genomes based on gene fusion events by Ouzounis, Christos A, Enright, Anton J, Iliopoulos, Ioannis, Kyrpides, Nikos C

“…A large-scale effort to measure, detect and analyse protein-protein interactions using experimental methods is under way. These include biochemistry such as…”
Get full text

Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs by López, G, Díaz-Cárdenas, C, David Alzate, J, Gonzalez, L N, Shapiro, N, Woyke, T, Kyrpides, N C, Restrepo, S, Baena, S

“…Three morphologically similar thermo-acidophilic strains, USBA-GBX-501, USBA-GBX-502 and USBA-GBX-503 , were isolated from acidic thermal springs at the…”
Get full text

The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata by Pagani, Ioanna, Liolios, Konstantinos, Jansson, Jakob, Chen, I-Min A., Smirnova, Tatyana, Nosrat, Bahador, Markowitz, Victor M., Kyrpides, Nikos C.

“…The Genomes OnLine Database (GOLD, http://www.genomesonline.org/) is a comprehensive resource for centralized monitoring of genome and metagenome projects…”
Get full text

Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata by Liolios, Konstantinos, Mavromatis, Konstantinos, Tavernarakis, Nektarios, Kyrpides, Nikos C

“…The Genomes On Line Database (GOLD) is a comprehensive resource that provides information on genome and metagenome projects worldwide. Complete and ongoing…”
Get full text

The Genome of the Obligately Intracellular Bacterium Ehrlichia canis Reveals Themes of Complex Membrane Structure and Immune Evasion Strategies by MAVROMATIS, K, KUYLER DOYLE, C, DETTER, J. C, LAND, M, RICHARDSON, P. M, YU, X. J, WALKER, D. H, MCBRIDE, J. W, KYRPIDES, N. C, LYKIDIS, A, IVANOVA, N, FRANCINO, M. P, CHAIN, P, SHIN, M, MALFATTI, S, LARIMER, F, COPELAND, A

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
Get full text

IMG/M: the integrated metagenome data management and comparative analysis system by Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Ratner, Anna, Jacob, Biju, Pati, Amrita, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Anderson, Iain, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.

“…The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes…”
Get full text

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction by Overbeek, R, Larsen, N, Pusch, G D, D'Souza, M, Selkov, Jr, E, Kyrpides, N, Fonstein, M, Maltsev, N, Selkov, E

“…The WIT (What Is There) (http://wit.mcs.anl.gov/WIT2/) system has been designed to support comparative analysis of sequenced genomes and to generate metabolic…”
Get full text

Universally Conserved Translation Initiation Factors by Kyrpides, Nikos C., Woese, Carl R.

“…The process by which translation is initiated has long been considered similar in Bacteria and Eukarya but accomplished by a different unrelated set of factors…”
Get full text

Genomes OnLine Database (GOLD 1.0) : a monitor of complete and ongoing genome projects world-wide by KYRPIDES, N. C

“…GOLD (Genomes On Line Database) is a World Wide Web resource for comprehensive access to information regarding complete and ongoing genome projects around the…”
Get full text

integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions by Markowitz, Victor M, Szeto, Ernest, Palaniappan, Krishna, Grechkin, Yuri, Chu, Ken, Chen, I. Min A, Dubchak, Inna, Anderson, Iain, Lykidis, Athanasios, Mavromatis, Konstantinos, Ivanova, Natalia N, Kyrpides, Nikos C

“…The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform for all publicly available genomes. IMG contains both…”
Get full text

Complete Genome Sequence of Anaeromyxobacter sp. Fw109-5, an Anaerobic, Metal-Reducing Bacterium Isolated from a Contaminated Subsurface Environment by Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Glavina Del Rio, T, Dalin, E, Tice, H, Pitluck, S, Sims, D, Brettin, T, Bruce, D C, Detter, J C, Han, C S, Schmutz, J, Larimer, F W, Land, M L, Hauser, L J, Kyrpides, N, Lykidis, A, Richardson, P, Belieav, A, Sanford, R A, Löeffler, F E, Fields, M W

“…We report the genome sequence of Anaeromyxobacter sp. Fw109-5, isolated from nitrate- and uranium-contaminated subsurface sediment of the Oak Ridge Integrated…”
Get full text

Comparison of the Complete Genome Sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000 by Feil, Helene, Feil, William S., Chain, Patrick, Larimer, Frank, DiBartolo, Genevieve, Copeland, Alex, Lykidis, Athanasios, Trong, Stephen, Nolan, Matt, Goltsman, Eugene, Thiel, James, Malfatti, Stephanie, Loper, Joyce E., Lapidus, Alla, Detter, John C., Land, Miriam, Richardson, Paul M., Kyrpides, Nikos C., Ivanova, Natalia, Lindow, Steven E.

“…The complete genomic sequence of Pseudomonas syringae pv. syringae B728a (Pss B728a) has been determined and is compared with that of P. syringae pv. tomato…”
Get full text

Archaeal Translation Initiation Revisited: The Initiation Factor 2 and Eukaryotic Initiation Factor 2B α -β -δ Subunit Families by Kyrpides, Nikos C., Woese, Carl R.

“…As the amount of available sequence data increases, it becomes apparent that our understanding of translation initiation is far from comprehensive and that…”
Get full text

Complete Genome Sequence of Alkaliphilus metalliredigens Strain QYMF, an Alkaliphilic and Metal-Reducing Bacterium Isolated from Borax-Contaminated Leachate Ponds by Hwang, C, Copeland, A, Lucas, S, Lapidus, A, Barry, K, Detter, J C, Glavina Del Rio, T, Hammon, N, Israni, S, Dalin, E, Tice, H, Pitluck, S, Chertkov, O, Brettin, T, Bruce, D, Han, C, Schmutz, J, Larimer, F, Land, M L, Hauser, L, Kyrpides, N, Mikhailova, N, Ye, Q, Zhou, J, Richardson, P, Fields, M W

“…Alkaliphilus metalliredigens strain QYMF is an anaerobic, alkaliphilic, and metal-reducing bacterium associated with phylum Firmicutes QYMF was isolated from…”
Get full text

Transcription in Archaea by Kyrpides, Nikos C., Ouzounis, Christos A.

“…Using the sequences of all the known transcription-associated proteins from Bacteria and Eucarya (a total of 4,147), we have identified their homologous…”
Get full text

The SPFH domain: implicated in regulating targeted protein turnover in stomatins and other membrane-associated proteins by Tavernarakis, Nektarios, Driscoll, Monica, Kyrpides, Nikos C.

Get full text

Whole‐genome sequence annotation: ‘Going wrong with confidence’ by Kyrpides, Nikos C., Ouzounis, Christos A.

“…The seventeenth complete genome, that of Chlamydia trachomatis, has been published recently, infusing the public database with another 894 protein sequences…”
Get full text