Search Results - "Kummerfeld, S"

The evolution of domain arrangements in proteins and interaction networks by Bornberg-Bauer, E, Beaussart, F, Kummerfeld, S K, Teichmann, S A, Weiner, 3rd, J

“…Proteins are composed of domains, which are conserved evolutionary units that often also correspond to functional units and can frequently be detected with…”
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DBD: a transcription factor prediction database by Kummerfeld, Sarah K, Teichmann, Sarah A

“…Regulation of gene expression influences almost all biological processes in an organism; sequence-specific DNA-binding transcription factors are critical to…”
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Understanding heterogeneity in the host response to Staphylococcus aureus infection for prognostic biomarker discovery by Dinoso, JB, Gutierrez, J, Choy, DF, Kummerfeld, S, Baruch, A, Chambers, HF, Rosenberger, CM

“…Keywords: Septic Shock, Gene Expression Dataset, Monocyte Subset, Severity Signature, Immune Cell Subset…”
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Relative rates of gene fusion and fission in multi-domain proteins by Kummerfeld, Sarah K., Teichmann, Sarah A.

“…During evolution genes can produce more complex proteins by gene fusion or less complex proteins by gene fission. Considering proteins from 131 completely…”
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The genome of the social amoeba Dictyostelium discoideum by Dear, P. H, Eichinger, L, Pachebat, J. A, Glöckner, G, Rajandream, M.-A, Sucgang, R, Berriman, M, Song, J, Olsen, R, Szafranski, K, Xu, Q, Tunggal, B, Kummerfeld, S, Madera, M, Konfortov, B. A, Rivero, F, Bankier, A. T, Lehmann, R, Hamlin, N, Davies, R, Gaudet, P, Fey, P, Pilcher, K, Chen, G, Saunders, D, Sodergren, E, Davis, P, Kerhornou, A, Nie, X, Hall, N, Anjard, C, Hemphill, L, Bason, N, Farbrother, P, Desany, B, Just, E, Morio, T, Rost, R, Churcher, C, Cooper, J, Haydock, S, van Driessche, N, Cronin, A, Goodhead, I, Muzny, D, Mourier, T, Pain, A, Lu, M, Harper, D, Lindsay, R, Hauser, H, James, K, Quiles, M, Madan Babu, M, Saito, T, Buchrieser, C, Wardroper, A, Felder, M, Thangavelu, M, Johnson, D, Knights, A, Loulseged, H, Mungall, K, Oliver, K, Price, C, Quail, M. A, Urushihara, H, Hernandez, J, Rabbinowitsch, E, Steffen, D, Sanders, M, Ma, J, Kohara, Y, Sharp, S, Simmonds, M, Spiegler, S, Tivey, A, Sugano, S, White, B, Walker, D, Woodward, J, Winckler, T, Tanaka, Y, Shaulsky, G, Schleicher, M, Weinstock, G, Rosenthal, A, Cox, E. C, Chisholm, R. L, Gibbs, R, Loomis, W. F, Platzer, M, Kay, R. R, Williams, J, Noegel, A. A, Barrell, B, Kuspa, A

“…The social amoebae are exceptional in their ability to alternate between unicellular and multicellular forms. Here we describe the genome of the best-studied…”
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A method to determine the fractal dimension of the cross-sectional jaggedness of the infarct scar edge by McLachlan, C S, Jelinek, H F, Kummerfeld, S K, Rummery, N, McLachlan, P D, Jusuf, P, Driussi, C, Yin, J

“…This study describes the use of a shareware software package available from the National Institutes of Health for computing the fractal dimension…”
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Cross-sectional infarct edge jaggedness does not influence ventricular electrical stability in a rabbit model of late myocardial infarct healing by McLachlan, C S, Jelinek, H F, Kummerfeld, S K, Rummery, N M, Jusuf, P R, Hambly, B, McGuire, M A

“…Previous studies have suggested that the jaggedness of the healed or healing infarct edge influences cardiac electrical stability. However, these findings have…”
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Sticking together? Falling apart? Exploring the dynamics of the interactome by Wilkins, Marc R., Kummerfeld, Sarah K.

“…Advances in techniques for the study of protein–protein interactions have dramatically improved our understanding of the interactome. However, we know little…”
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Transcriptional Landscape of the Mammalian Genome by Carninci, P, Kasukawa, T, Katayama, S, Gough, J, Frith, M. C, Maeda, N, Oyama, R, Lenhard, B, Wells, C, Bajic, V. B, Brenner, S. E, Batalov, S, Forrest, A. R. R, Zavolan, M, Wilming, L. G, Ambesi-Impiombato, A, Aturaliya, R. N, Bailey, T. L, Bansal, M, Baxter, L, Beisel, K. W, Bono, H, Chalk, A. M, Chiu, K. P, Christoffels, A, Dalla, E, Dalrymple, B. P, de Bono, B, Down, T, Engstrom, P, Fagiolini, M, Faulkner, G, Furuno, M, Gingeras, T. R, Gojobori, T, Gustincich, S, Harbers, M, Hensch, T. K, Hirokawa, N, Hill, D, Ikeo, K, Ishikawa, T, Jakt, M, Kanapin, A, Katoh, M, Kawasawa, Y, Kitano, H, Kollias, G, Kurochkin, I. V, Lareau, L. F, Liu, J, Liuni, S, Madera, M, Matsuda, H, Matsuzawa, S, Morris, K, Nakano, N, Nishiguchi, S, Nishikawa, S, Nori, F, Pesole, G, Reed, J, Ruan, Y, Salzberg, S. L, Schneider, C, Sekiguchi, K, Semple, C. A. M, Sessa, L, Sheng, Y, Shibata, Y, Shimada, K, Sinclair, B, Sperling, S, Sultana, R, Taki, K, Ueda, H. R, Wei, C. L, Yamanishi, H, Zabarovsky, E, Zhu, S, Hide, W, Bult, C, Teasdale, R. D, Liu, E. T, Mattick, J. S, Hume, D. A, Kai, C, Sasaki, D, Kanamori-Katayama, M, Suzuki, M, Imamura, K, Itoh, M, Kato, T, Kawagashira, N, Nakano, K, Ninomiya, N, Okada, M, Suzuki, S, Watahiki, A, Kawai, J

“…This study describes comprehensive polling of transcription start and termination sites and analysis of previously unidentified full-length complementary DNAs…”
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Comparative Genomics of Trypanosomatid Parasitic Protozoa by El-Sayed, Najib M, Myler, Peter J, Blandin, Gae̊lle, Berriman, Matthew, Crabtree, Jonathan, Aggarwal, Gautam, Caler, Elisabet, Renauld, Hubert, Worthey, Elizabeth A, Hertz-Fowler, Christiane, Ghedin, Elodie, Peacock, Christopher, Bartholomeu, Daniella C, Haas, Brian J, Tran, Anh-Nhi, Wortman, Jennifer R, Alsmark, U. Cecilia M, Angiuoli, Samuel, Anupama, Atashi, Badger, Jonathan, Bringaud, Frederic, Cadag, Eithon, Carlton, Jane M, Cerqueira, Gustavo C, Creasy, Todd, Delcher, Arthur L, Djikeng, Appolinaire, Embley, T. Martin, Hauser, Christopher, Ivens, Alasdair C, Kummerfeld, Sarah K, Pereira-Leal, Jose B, Nilsson, Daniel, Peterson, Jeremy, Salzberg, Steven L, Shallom, Joshua, Silva, Joana C, Sundaram, Jaideep, Westenberger, Scott, White, Owen, Melville, Sara E, Donelson, John E, Andersson, Björn, Stuart, Kenneth D, Hall, Neil

“…A comparison of gene content and genome architecture of Trypanosoma brucei, Trypanosoma cruzi, and Leishmania major, three related pathogens with different…”
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β-Cell Insulin Secretion Requires the Ubiquitin Ligase COP1 by Suriben, Rowena, Kaihara, Kelly A., Paolino, Magdalena, Reichelt, Mike, Kummerfeld, Sarah K., Modrusan, Zora, Dugger, Debra L., Newton, Kim, Sagolla, Meredith, Webster, Joshua D., Liu, Jinfeng, Hebrok, Matthias, Dixit, Vishva M.

“…A variety of signals finely tune insulin secretion by pancreatic β cells to prevent both hyper-and hypoglycemic states. Here, we show that post-translational…”
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The SUPERFAMILY database in 2004: additions and improvements by Madera, Martin, Vogel, Christine, Kummerfeld, Sarah K., Chothia, Cyrus, Gough, Julian

“…The SUPERFAMILY database provides structural assignments to protein sequences and a framework for analysis of the results. At the core of the database is a…”
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Tyramide signal amplification enhances the detectable distribution of connexin-43 positive gap junctions across the ventricular wall of the rabbit heart by McLachlan, Craig S, Jusuf, Patricia R, Rummery, Nicole, Kummerfeld, Sarah K, Hambly, Brett, McGuire, Mark A, Turner, Virginia

“…Previous mapping studies examinig the distribution and pattern of staining for connexin-43 expression (the major ventricular gap junction protein) across the…”
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