Search Results - "Kudrna, David A"

Gapless assembly of maize chromosomes using long-read technologies by Liu, Jianing, Seetharam, Arun S, Chougule, Kapeel, Ou, Shujun, Swentowsky, Kyle W, Gent, Jonathan I, Llaca, Victor, Woodhouse, Margaret R, Manchanda, Nancy, Presting, Gernot G, Kudrna, David A, Alabady, Magdy, Hirsch, Candice N, Fengler, Kevin A, Ware, Doreen, Michael, Todd P, Hufford, Matthew B, Dawe, R Kelly

“…Creating gapless telomere-to-telomere assemblies of complex genomes is one of the ultimate challenges in genomics. We use two independent assemblies and an…”
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Genome sequence of the model rice variety KitaakeX by Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A, Copetti, Dario, Duong, Phat Q, Pham, Nikki T, Kudrna, David A, Talag, Jayson, Schackwitz, Wendy S, Lipzen, Anna M, Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R, Xing, Feng, Xie, Weibo, Barry, Kerrie W, Wing, Rod A, Schmutz, Jeremy, Li, Guotian, Ronald, Pamela C

“…The availability of thousands of complete rice genome sequences from diverse varieties and accessions has laid the foundation for in-depth exploration of the…”
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De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes by Hufford, Matthew B, Seetharam, Arun S, Woodhouse, Margaret R, Chougule, Kapeel M, Ou, Shujun, Liu, Jianing, Ricci, William A, Guo, Tingting, Olson, Andrew, Qiu, Yinjie, Della Coletta, Rafael, Tittes, Silas, Hudson, Asher I, Marand, Alexandre P, Wei, Sharon, Lu, Zhenyuan, Wang, Bo, Tello-Ruiz, Marcela K, Piri, Rebecca D, Wang, Na, Kim, Dong Won, Zeng, Yibing, O'Connor, Christine H, Li, Xianran, Gilbert, Amanda M, Baggs, Erin, Krasileva, Ksenia V, Portwood, 2nd, John L, Cannon, Ethalinda K S, Andorf, Carson M, Manchanda, Nancy, Snodgrass, Samantha J, Hufnagel, David E, Jiang, Qiuhan, Pedersen, Sarah, Syring, Michael L, Kudrna, David A, Llaca, Victor, Fengler, Kevin, Schmitz, Robert J, Ross-Ibarra, Jeffrey, Yu, Jianming, Gent, Jonathan I, Hirsch, Candice N, Ware, Doreen, Dawe, R Kelly

“…We report de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 inbreds that serve as the founders for the maize nested association…”
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The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research by Song, Xiang, Goicoechea, Jose Luis, Ammiraju, Jetty S S, Luo, Meizhong, He, Ruifeng, Lin, Jinke, Lee, So-Jeong, Sisneros, Nicholas, Watts, Tom, Kudrna, David A, Golser, Wolfgang, Ashley, Elizabeth, Collura, Kristi, Braidotti, Michele, Yu, Yeisoo, Matzkin, Luciano M, McAllister, Bryant F, Markow, Therese Ann, Wing, Rod A

“…The genus Drosophila has been the subject of intense comparative phylogenomics characterization to provide insights into genome evolution under diverse…”
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A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes by Paritosh, Kumar, Yadava, Satish Kumar, Singh, Priyansha, Bhayana, Latika, Mukhopadhyay, Arundhati, Gupta, Vibha, Bisht, Naveen Chandra, Zhang, Jianwei, Kudrna, David A., Copetti, Dario, Wing, Rod A., Reddy Lachagari, Vijaya Bhasker, Pradhan, Akshay Kumar, Pental, Deepak

“…Summary Brassica juncea (AABB), commonly referred to as mustard, is a natural allopolyploid of two diploid species—B. rapa (AA) and B. nigra (BB). We report a…”
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Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63 by Zhang, Jianwei, 张建伟, Chen, Ling-Ling, 陈玲玲, Xing, Feng, 邢锋, Kudrna, David A., Yao, Wen, 姚文, Copetti, Dario, Mu, Ting, 穆婷, Li, Weiming, 李伟明, Song, Jia-Ming, 宋佳明, Xie, Weibo, 谢为博, Lee, Seunghee, Talag, Jayson, Shao, Lin, 邵林, An, Yue, 安玥, Zhang, Chun-Liu, 张春柳, Ouyang, Yidan, 欧阳亦聃, Sun, Shuai, 孙帅, Jiao, Wen-Biao, 焦文标, Lv, Fang, 吕芳, Du, Bogu, 杜博贾, Luo, Meizhong, 罗美中, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, 熊立仲, Wu, Changyin, 吴昌银, Xing, Yongzhong, 邢永忠, Zhou, Dao-Xiu, 周道绣, Yu, Sibin, 余四斌, Zhao, Yu, 赵毓, Wang, Gongwei, 王功伟, Yu, Yeisoo, Luo, Yijie, 罗艺洁, Zhou, Zhi-Wei, 周智伟, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A., Zhang, Qifa, 张启发

“…Asian cultivated rice consists of two subspecies: Oryza sativa subsp. indica and O. sativa subsp. japonica. Despite the fact that indica rice accounts for over…”
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Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice by Thathapalli Prakash, Parthiban, Chebotarov, Dmytro, Zhang, Jianwei, Kudrna, David A, Torres, Rolando O, Natividad, Mignon A, Quintana, Marinell R, Song, Jiaming, Maldonado, Carlos E, Hechanova, Sherry Lou, Jena, Kshirod, Wing, Rod A, Henry, Amelia

“…Abstract Developing drought-resistant rice (Oryza sativa, L.) is essential for improving field productivity, especially in rain-fed areas affected by climate…”
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Comparative BAC‐based physical mapping of Oryza sativa ssp. indica var. 93–11 and evaluation of the two rice reference sequence assemblies by Pan, Yonglong, Deng, Ying, Lin, Haiyan, Kudrna, David A, Wing, Rod A, Li, Lijia, Zhang, Qifa, Luo, Meizhong

“…Reference sequences are sequences that are used for public consultation, and therefore must be of high quality. Using the whole‐genome shotgun/next‐generation…”
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Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping by Wang, Xiaoming, Kudrna, David A, Pan, Yonglong, Wang, Hao, Liu, Lin, Lin, Haiyan, Zhang, Jianwei, Song, Xiang, Goicoechea, Jose Luis, Wing, Rod A, Zhang, Qifa, Luo, Meizhong

“…Bacterial artificial chromosome (BAC) physical maps embedding a large number of BAC end sequences (BESs) were generated for Oryza sativa ssp. indica varieties…”
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Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives by Wang, Chao, Shi, Xue, Liu, Lin, Li, Haiyan, Ammiraju, Jetty S S, Kudrna, David A, Xiong, Wentao, Wang, Hao, Dai, Zhaozhao, Zheng, Yonglian, Lai, Jinsheng, Jin, Weiwei, Messing, Joachim, Bennetzen, Jeffrey L, Wing, Rod A, Luo, Meizhong

“…Maize is one of the most important food crops and a key model for genetics and developmental biology. A genetically anchored and high-quality draft genome…”
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Reduced accumulation of ABA during water stress in a molybdenum cofactor mutant of barley by Walker-Simmons, M. (USDA, ARS, Washington State University, Pullman, WA), Kudrna, D.A, Warner, R.L

“…A barley (Hordeum vulgare L.) mutant (Az34) has been identified with low basal levels of abscisic acid (ABA) and with reduced capacity for producing ABA in…”
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Molecular marker-assisted selection for enhanced yield in malting barley by Schmierer, Deric A, Kandemir, Nejdet, Kudrna, David A, Jones, Berne L, Ullrich, Steven E, Kleinhofs, Andris

“…Brewers are reluctant to change malting barley (Hordeum vulgare ssp. vulgare L.) cultivars due to concerns of altered flavor and brewing procedures. The U.S…”
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Molecular marker-assisted selection for enhanced yield in malting barley by Schmierer, D.A, Kandemir, N, Kudrna, D.A, Jones, B.L, Ullrich, S.E, Kleinhofs, A

“…Brewers are reluctant to change malting barley (Hordeum vulgare ssp. vulgare L.) cultivars due to concerns of altered flavor and brewing procedures. The U.S…”
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Rice-barley synteny and its application to saturation mapping of the barley Rpg1 region by Kilian, A, Kudrna, D.A, Kleinhofs, A, Yano, M, Kurata, N, Steffenson, B, Sasaki, T

“…In order to facilitate the map-based cloning of the barley stem rust resistance gene Rpg1, we have demonstrated a high degree of synteny at a micro level…”
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Genome sequence of the model rice variety KitaakeX by Jain, Rashmi, Jenkins, Jerry, Shu, Shengqiang, Chern, Mawsheng, Martin, Joel A., Copetti, Dario, Duong, Phat Q., Pham, Nikki T., Kudrna, David A., Talag, Jayson, Schackwitz, Wendy S., Lipzen, Anna M., Dilworth, David, Bauer, Diane, Grimwood, Jane, Nelson, Catherine R., Xing, Feng, Xie, Weibo, Barry, Kerrie W., Wing, Rod A., Schmutz, Jeremy, Li, Guotian, Ronald, Pamela C.

“…Abstract Background The availability of thousands of complete rice genome sequences from diverse varieties and accessions has laid the foundation for in-depth…”
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Comparative BAC ‐based physical mapping of O ryza sativa ssp. indica var. 93–11 and evaluation of the two rice reference sequence assemblies by Pan, Yonglong, Deng, Ying, Lin, Haiyan, Kudrna, David A., Wing, Rod A., Li, Lijia, Zhang, Qifa, Luo, Meizhong

“…Summary Reference sequences are sequences that are used for public consultation, and therefore must be of high quality. Using the whole‐genome…”
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Reduced Accumulation of ABA during Water Stress in a Molybdenum Cofactor Mutant of Barley 1 by Walker-Simmons, Mary, Kudrna, David A., Warner, Robert L.

“…A barley ( Hordeum vulgare L.) mutant (Az34) has been identified with low basal levels of abscisic acid (ABA) and with reduced capacity for producing ABA in…”
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Stable transformation of barley callus using biolistic® particle bombardment and the phosphinothricin acetyltransferase (bar) gene by STIFF, C. M, KILIAN, A, HUAPING ZHOU, KUDRNA, D. A, KLEINHOFS, A

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