Search Results - "Kristen Knipe"

The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement by Weigand, Michael R, Peng, Yanhui, Loparev, Vladimir, Batra, Dhwani, Bowden, Katherine E, Burroughs, Mark, Cassiday, Pamela K, Davis, Jamie K, Johnson, Taccara, Juieng, Phalasy, Knipe, Kristen, Mathis, Marsenia H, Pruitt, Andrea M, Rowe, Lori, Sheth, Mili, Tondella, M Lucia, Williams, Margaret M

“…Despite high pertussis vaccine coverage, reported cases of whooping cough (pertussis) have increased over the last decade in the United States and other…”
Get full text

Multidrug-resistant IncA/C plasmid in Vibrio cholerae from Haiti by Folster, Jason P, Katz, Lee, McCullough, Andre, Parsons, Michele B, Knipe, Kristen, Sammons, Scott A, Boncy, Jacques, Tarr, Cheryl Lea, Whichard, Jean M

Get full text

vanG element insertions within a conserved chromosomal site conferring vancomycin resistance to Streptococcus agalactiae and Streptococcus anginosus by Srinivasan, Velusamy, Metcalf, Benjamin J, Knipe, Kristen M, Ouattara, Mahamoudou, McGee, Lesley, Shewmaker, Patricia L, Glennen, Anita, Nichols, Megin, Harris, Carol, Brimmage, Mary, Ostrowsky, Belinda, Park, Connie J, Schrag, Stephanie J, Frace, Michael A, Sammons, Scott A, Beall, Bernard

“…Three vancomycin-resistant streptococcal strains carrying vanG elements (two invasive Streptococcus agalactiae isolates [GBS-NY and GBS-NM, both serotype II…”
Get full text

Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens by Weigand, Michael R, Peng, Yanhui, Batra, Dhwani, Burroughs, Mark, Davis, Jamie K, Knipe, Kristen, Loparev, Vladimir N, Johnson, Taccara, Juieng, Phalasy, Rowe, Lori A, Sheth, Mili, Tang, Kevin, Unoarumhi, Yvette, Williams, Margaret M, Tondella, M Lucia

“…Whooping cough (pertussis), primarily caused by , has resurged in the United States, and circulating strains exhibit considerable chromosome structural…”
Get full text

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics by Xiaoli, Lingzi, Hagey, Jill V, Park, Daniel J, Gulvik, Christopher A, Young, Erin L, Alikhan, Nabil-Fareed, Lawsin, Adrian, Hassell, Norman, Knipe, Kristen, Oakeson, Kelly F, Retchless, Adam C, Shakya, Migun, Lo, Chien-Chi, Chain, Patrick, Page, Andrew J, Metcalf, Benjamin J, Su, Michelle, Rowell, Jessica, Vidyaprakash, Eshaw, Paden, Clinton R, Huang, Andrew D, Roellig, Dawn, Patel, Ketan, Winglee, Kathryn, Weigand, Michael R, Katz, Lee S

“…Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of coronavirus disease 2019 (COVID-19), has spread globally and is being surveilled…”
Get full text

Genome Structural Diversity among 31 Bordetella pertussis Isolates from Two Recent U.S. Whooping Cough Statewide Epidemics by Bowden, Katherine E, Weigand, Michael R, Peng, Yanhui, Cassiday, Pamela K, Sammons, Scott, Knipe, Kristen, Rowe, Lori A, Loparev, Vladimir, Sheth, Mili, Weening, Keeley, Tondella, M Lucia, Williams, Margaret M

“…During 2010 and 2012, California and Vermont, respectively, experienced statewide epidemics of pertussis with differences seen in the demographic affected,…”
Get full text

Genome Sequences for Five Strains of the Emerging Pathogen Haemophilus haemolyticus by Jordan, I. King, Conley, Andrew B, Antonov, Ivan V, Arthur, Robert A, Cook, Erin D, Cooper, Guy P, Jones, Bernard L, Knipe, Kristen M, Lee, Kevin J, Liu, Xing, Mitchell, Gabriel J, Pande, Pushkar R, Petit, Robert A, Qin, Shaopu, Rajan, Vani N, Sarda, Shruti, Sebastian, Aswathy, Tang, Shiyuyun, Thapliyal, Racchit, Varghese, Neha J, Ye, Tianjun, Katz, Lee S, Wang, Xin, Rowe, Lori, Frace, Michael, Mayer, Leonard W

“…We report the first whole-genome sequences for five strains, two carried and three pathogenic, of the emerging pathogen Haemophilus haemolyticus. Preliminary…”
Get full text

The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012 by Retchless, Adam C, Hu, Fang, Ouédraogo, Abdoul-Salam, Diarra, Seydou, Knipe, Kristen, Sheth, Mili, Rowe, Lori A, Sangaré, Lassana, Ky Ba, Absetou, Ouangraoua, Soumeya, Batra, Dhwani, Novak, Ryan T, Ouédraogo Traoré, Rasmata, Wang, Xin

“…Epidemics of invasive meningococcal disease (IMD) caused by meningococcal serogroup A have been eliminated from the sub-Saharan African so-called "meningitis…”
Get full text

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25 by Lindsey, Rebecca L, Knipe, Kristen, Rowe, Lori, Garcia-Toledo, Lisley, Loparev, Vladimir, Juieng, Phalasy, Trees, Eija, Strockbine, Nancy, Stripling, Devon, Gerner-Smidt, Peter

“…Shiga toxin-producing Escherichia coli (STEC) is an important foodborne pathogen. Here, we report complete whole-genome sequences for two STEC strains of…”
Get full text

Complete Genome Sequences for Three Chromosomes of the Burkholderia stabilis Type Strain (ATCC BAA-67) by Bugrysheva, Julia V, Cherney, Blake, Sue, David, Conley, Andrew B, Rowe, Lori A, Knipe, Kristen M, Frace, Michael A, Loparev, Vladimir N, Avila, Julie R, Anderson, Kevin, Hodge, David R, Pillai, Segaran P, Weigel, Linda M

“…We report here the complete annotated genome sequence of the Burkholderia stabilis type strain ATCC BAA-67. There were three circular chromosomes with a…”
Get full text

Complete Genome Sequences of Four Strains from the 2015-2016 Elizabethkingia anophelis Outbreak by Nicholson, Ainsley C, Whitney, Anne M, Emery, Brian D, Bell, Melissa E, Gartin, Jarrett T, Humrighouse, Ben W, Loparev, Vladimir N, Batra, Dhwani, Sheth, Mili, Rowe, Lori A, Juieng, Phalasy, Knipe, Kristen, Gulvik, Christopher, McQuiston, John R

“…The complete circularized genome sequences of selected specimens from the largest known Elizabethkingia anophelis outbreak to date are described here. Genomic…”
Get full text

Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen by Gladney, Lori M, Katz, Lee S, Knipe, Kristen M, Rowe, Lori A, Conley, Andrew B, Rishishwar, Lavanya, Mariño-Ramírez, Leonardo, Jordan, I King, Tarr, Cheryl L

“…Vibrio navarrensis is an aquatic bacterium recently shown to be associated with human illness. We report the first genome sequences of three V. navarrensis…”
Get full text

Genomic Survey of Bordetella pertussis Diversity, United States, 2000-2013 by Weigand, Michael R, Williams, Margaret M, Peng, Yanhui, Kania, Dane, Pawloski, Lucia C, Tondella, Maria L

“…We characterized 170 complete genome assemblies from clinical Bordetella pertussis isolates representing geographic and temporal diversity in the United…”
Get full text

Performance Characteristics of the Abbott BinaxNOW SARS-CoV-2 Antigen Test in Comparison to Real-Time Reverse Transcriptase PCR and Viral Culture in Community Testing Sites during November 2020 by Almendares, Olivia, Prince-Guerra, Jessica L, Nolen, Leisha D, Gunn, Jayleen K L, Dale, Ariella P, Buono, Sean A, Deutsch-Feldman, Molly, Suppiah, Suganthi, Hao, LiJuan, Zeng, Yan, Stevens, Valerie A, Knipe, Kristen, Pompey, Justine, Atherstone, Christine, Bui, David P, Powell, Tracy, Tamin, Azaibi, Harcourt, Jennifer L, Petway, Marla, Bohannon, Caitlin, Folster, Jennifer M, MacNeil, Adam, Salerno, Reynolds, Kuhnert-Tallman, Wendi, Tate, Jacqueline E, Thornburg, Natalie, Kirking, Hannah L, Sheiban, Khalilullah, Kudrna, Julie, Cullen, Theresa, Komatsu, Kenneth K, Villanueva, Julie M, Rose, Dale A, Neatherlin, John C, Anderson, Mark, Rota, Paul A, Honein, Margaret A, Bower, William A

“…Point-of-care antigen tests are an important tool for SARS-CoV-2 detection. Antigen tests are less sensitive than real-time reverse transcriptase PCR…”
Get full text

Transmission potential of vaccinated and unvaccinated persons infected with the SARS-CoV-2 Delta variant in a federal prison, July—August 2021 by Salvatore, Phillip P., Lee, Christine C., Sleweon, Sadia, McCormick, David W., Nicolae, Lavinia, Knipe, Kristen, Dixon, Tom, Banta, Robert, Ogle, Isaac, Young, Cristen, Dusseau, Charles, Salmonson, Shawn, Ogden, Charles, Godwin, Eric, Ballom, TeCora, Rhodes, Tara, Wynn, Nhien Tran, David, Ebenezer, Bessey, Theresa K., Kim, Gimin, Suppiah, Suganthi, Tamin, Azaibi, Harcourt, Jennifer L., Sheth, Mili, Lowe, Luis, Browne, Hannah, Tate, Jacqueline E., Kirking, Hannah L., Hagan, Liesl M.

“…The extent to which vaccinated persons who become infected with SARS-CoV-2 contribute to transmission is unclear. During a SARS-CoV-2 Delta variant outbreak…”
Get full text

Evaluation of Abbott BinaxNOW Rapid Antigen Test for SARS-CoV-2 Infection at Two Community-Based Testing Sites - Pima County, Arizona, November 3-17, 2020 by Prince-Guerra, Jessica L, Almendares, Olivia, Nolen, Leisha D, Gunn, Jayleen K L, Dale, Ariella P, Buono, Sean A, Deutsch-Feldman, Molly, Suppiah, Suganthi, Hao, LiJuan, Zeng, Yan, Stevens, Valerie A, Knipe, Kristen, Pompey, Justine, Atherstone, Christine, Bui, David P, Powell, Tracy, Tamin, Azaibi, Harcourt, Jennifer L, Shewmaker, Patricia L, Medrzycki, Magdalena, Wong, Phili, Jain, Shilpi, Tejada-Strop, Alexandra, Rogers, Shannon, Emery, Brian, Wang, Houping, Petway, Marla, Bohannon, Caitlin, Folster, Jennifer M, MacNeil, Adam, Salerno, Reynolds, Kuhnert-Tallman, Wendi, Tate, Jacqueline E, Thornburg, Natalie J, Kirking, Hannah L, Sheiban, Khalilullah, Kudrna, Julie, Cullen, Theresa, Komatsu, Kenneth K, Villanueva, Julie M, Rose, Dale A, Neatherlin, John C, Anderson, Mark, Rota, Paul A, Honein, Margaret A, Bower, William A

“…Rapid antigen tests, such as the Abbott BinaxNOW COVID-19 Ag Card (BinaxNOW), offer results more rapidly (approximately 15-30 minutes) and at a lower cost than…”
Get full text

Screening and Genomic Characterization of Filamentous Hemagglutinin-Deficient Bordetella pertussis by Weigand, Michael R, Pawloski, Lucia C, Peng, Yanhui, Ju, Hong, Burroughs, Mark, Cassiday, Pamela K, Davis, Jamie K, DuVall, Marina, Johnson, Taccara, Juieng, Phalasy, Knipe, Kristen, Loparev, Vladimir N, Mathis, Marsenia H, Rowe, Lori A, Sheth, Mili, Williams, Margaret M, Tondella, M Lucia

“…Despite high vaccine coverage, pertussis cases in the United States have increased over the last decade. Growing evidence suggests that disease resurgence…”
Get full text

Conjugal Transfer, Whole-Genome Sequencing, and Plasmid Analysis of Four mcr-1 -Bearing Isolates from U.S. Patients by Zhu, Wenming, Lawsin, Adrian, Lindsey, Rebecca L, Batra, Dhwani, Knipe, Kristen, Yoo, Brian B, Perry, K Allison, Rowe, Lori A, Lonsway, David, Walters, Maroya S, Rasheed, J Kamile, Halpin, Alison Laufer

“…Four clinical isolates bearing gene-harboring plasmids were characterized. All isolates demonstrated the ability to transfer colistin resistance to ; plasmids…”
Get full text

Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022 by Lambrou, Anastasia S, Shirk, Philip, Steele, Molly K, Paul, Prabasaj, Paden, Clinton R, Cadwell, Betsy, Reese, Heather E, Aoki, Yutaka, Hassell, Norman, Zheng, Xiao-Yu, Talarico, Sarah, Chen, Jessica C, Oberste, M Steven, Batra, Dhwani, McMullan, Laura K, Halpin, Alison Laufer, Galloway, Summer E, MacCannell, Duncan R, Kondor, Rebecca, Barnes, John, MacNeil, Adam, Silk, Benjamin J, Dugan, Vivien G, Scobie, Heather M, Wentworth, David E, Caravas, Jason, Kovacs, Nicholas A, Gerhart, Jonathan G, Jia Ng, Han, Beck, Andrew, Chau, Reina, Cintron, Roxana, Cook, Peter W, Gulvik, Christopher A, Howard, Dakota, Jang, Yunho, Knipe, Kristen, Lacek, Kristine A, Moser, Kara A, Paskey, Adrian C, Rambo-Martin, Benjamin L, Nagilla, Roopa R, Retchless, Adam C, Schmerer, Matthew W, Seby, Sandra, Shepard, Samuel S, Stanton, Richard A, Stark, Thomas J, Uehara, Anna, Unoarumhi, Yvette, Bentz, Meghan L, Burgin, Alex, Burroughs, Mark, Davis, Morgan L, Keller, Matthew W, Keong, Lisa M, Le, Shoshona S, Lee, Justin S, Madden Jr, Joseph C, Nobles, Sarah, Owuor, D. Collins, Padilla, Jasmine, Sheth, Mili, Wilson, Malania M

“…Genomic surveillance is a critical tool for tracking emerging variants of SARS-CoV-2 (the virus that causes COVID-19), which can exhibit characteristics that…”
Get full text

High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing by Smith, Peyton, Lindsey, Rebecca L, Rowe, Lori A, Batra, Dhwani, Stripling, Devon, Garcia-Toledo, Lisley, Drapeau, Daniel, Knipe, Kristen, Strockbine, Nancy

“…Enterotoxigenic (ETEC) is an important diarrheagenic pathogen. We report here the high-quality whole-genome sequences of 21 ETEC strains isolated from patients…”
Get full text