Search Results - "Krasileva, Ksenia V"

Evolution of Plant NLRs: From Natural History to Precise Modifications by Tamborski, Janina, Krasileva, Ksenia V

“…Nucleotide-binding leucine-rich repeat receptors (NLRs) monitor the plant intracellular environment for signs of pathogen infection. Several mechanisms of…”
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Computational Structural Genomics Unravels Common Folds and Novel Families in the Secretome of Fungal Phytopathogen Magnaporthe oryzae by Seong, Kyungyong, Krasileva, Ksenia V

“…Structural biology has the potential to illuminate the evolution of pathogen effectors and their commonalities that cannot be readily detected at the primary…”
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Altering Specificity and Autoactivity of Plant Immune Receptors Sr33 and Sr50 Via a Rational Engineering Approach by Tamborski, Janina, Seong, Kyungyong, Liu, Furong, Staskawicz, Brian J, Krasileva, Ksenia V

“…Many resistance genes deployed against pathogens in crops are intracellular nucleotide-binding (NB) leucine-rich repeat (LRR) receptors (NLRs). The ability to…”
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Uncovering hidden variation in polyploid wheat by Krasileva, Ksenia V., Vasquez-Gross, Hans A., Howell, Tyson, Bailey, Paul, Paraiso, Francine, Clissold, Leah, Simmonds, James, Ramirez-Gonzalez, Ricardo H., Wang, Xiaodong, Borrill, Philippa, Fosker, Christine, Ayling, Sarah, Phillips, Andrew L., Uauy, Cristobal, Dubcovsky, Jorge

“…Comprehensive reverse genetic resources, which have been key to understanding gene function in diploid model organisms, are missing in many polyploid crops…”
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The NLR-Annotator Tool Enables Annotation of the Intracellular Immune Receptor Repertoire by Steuernagel, Burkhard, Witek, Kamil, Krattinger, Simon G, Ramirez-Gonzalez, Ricardo H, Schoonbeek, Henk-Jan, Yu, Guotai, Baggs, Erin, Witek, Agnieszka I, Yadav, Inderjit, Krasileva, Ksenia V, Jones, Jonathan D G, Uauy, Cristobal, Keller, Beat, Ridout, Christopher J, Wulff, Brande B H

“…Disease resistance genes encoding nucleotide-binding and leucine-rich repeat (NLR) intracellular immune receptor proteins detect pathogens by the presence of…”
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The extrachromosomal circular DNAs of the rice blast pathogen Magnaporthe oryzae contain a wide variety of LTR retrotransposons, genes, and effectors by Joubert, Pierre M, Krasileva, Ksenia V

“…Abstract Background One of the ways genomes respond to stress is by producing extrachromosomal circular DNAs (eccDNAs). EccDNAs can contain genes and…”
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Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens by Sarris, Panagiotis F, Cevik, Volkan, Dagdas, Gulay, Jones, Jonathan D G, Krasileva, Ksenia V

“…Plants deploy immune receptors to detect pathogen-derived molecules and initiate defense responses. Intracellular plant immune receptors called…”
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Convergent Loss of an EDS1/PAD4 Signaling Pathway in Several Plant Lineages Reveals Coevolved Components of Plant Immunity and Drought Response[OPEN] by Baggs, Erin L., Monroe, J. Grey, Thanki, Anil S., O’Grady, Ruby, Schudoma, Christian, Haerty, Wilfried, Krasileva, Ksenia V.

“…Genome analyses reveal that several plants have lost a major part of the immune system. Abstract Plant innate immunity relies on nucleotide binding…”
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Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions by Bailey, Paul C, Schudoma, Christian, Jackson, William, Baggs, Erin, Dagdas, Gulay, Haerty, Wilfried, Moscou, Matthew, Krasileva, Ksenia V

“…The plant immune system is innate and encoded in the germline. Using it efficiently, plants are capable of recognizing a diverse range of rapidly evolving…”
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Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing by Henry, Isabelle M., Nagalakshmi, Ugrappa, Lieberman, Meric C., Ngo, Kathie J., Krasileva, Ksenia V., Vasquez-Gross, Hans, Akhunova, Alina, Akhunov, Eduard, Dubcovsky, Jorge, Tai, Thomas H., Comai, Luca

“…Chemical mutagenesis efficiently generates phenotypic variation in otherwise homogeneous genetic backgrounds, enabling functional analysis of genes. Advances…”
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Sequence divergent RXLR effectors share a structural fold conserved across plant pathogenic oomycete species by Win, Joe, Krasileva, Ksenia V, Kamoun, Sophien, Shirasu, Ken, Staskawicz, Brian J, Banfield, Mark J

“…Funding: This work has been supported by research funds to BJS from The National Science Foundation (USA), grant 0726229; to KS from KAKENHI, grant-in-aid…”
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Heterologous Expression Screens in Nicotiana benthamiana Identify a Candidate Effector of the Wheat Yellow Rust Pathogen that Associates with Processing Bodies by Petre, Benjamin, Saunders, Diane G O, Sklenar, Jan, Lorrain, Cécile, Krasileva, Ksenia V, Win, Joe, Duplessis, Sébastien, Kamoun, Sophien

“…Rust fungal pathogens of wheat (Triticum spp.) affect crop yields worldwide. The molecular mechanisms underlying the virulence of these pathogens remain…”
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Adaptive Evolution Has Targeted the C-Terminal Domain of the RXLR Effectors of Plant Pathogenic Oomycetes by Win, Joe, Morgan, William, Bos, Jorunn, Krasileva, Ksenia V, Cano, Liliana M, Chaparro-Garcia, Angela, Ammar, Randa, Staskawicz, Brian J, Kamoun, Sophien

“…Oomycete plant pathogens deliver effector proteins inside host cells to modulate plant defense circuitry and to enable parasitic colonization. These effectors…”
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Computational prediction and molecular characterization of an oomycete effector and the cognate Arabidopsis resistance gene by Goritschnig, Sandra, Krasileva, Ksenia V, Dahlbeck, Douglas, Staskawicz, Brian J

“…Hyaloperonospora arabidopsidis (Hpa) is an obligate biotroph oomycete pathogen of the model plant Arabidopsis thaliana and contains a large set of effector…”
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The "sensor domains" of plant NLR proteins: more than decoys? by Wu, Chih-Hang, Krasileva, Ksenia V, Banfield, Mark J, Terauchi, Ryohei, Kamoun, Sophien

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Hyaloperonospora arabidopsidis ATR1 effector is a repeat protein with distributed recognition surfaces by Chou, Seemay, Krasileva, Ksenia V, Holton, James M, Steinbrenner, Adam D, Alber, Tom, Staskawicz, Brian J

“…The in planta association of the Hyaloperonospora arabidopsidis effector ATR1 with the cognate Arabidopsis thaliana RPP1 immune receptor activates a…”
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The role of transposable elements and DNA damage repair mechanisms in gene duplications and gene fusions in plant genomes by Krasileva, Ksenia V

“…•Plant genomes are dynamic, and gene-size insertions are prominent source of structural variation evident even within species.•Gene insertions, tandem…”
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A wheat kinase and immune receptor form host-specificity barriers against the blast fungus by Arora, Sanu, Steed, Andrew, Goddard, Rachel, Gaurav, Kumar, O’Hara, Tom, Schoen, Adam, Rawat, Nidhi, Elkot, Ahmed F., Korolev, Andrey V., Chinoy, Catherine, Nicholson, Martha H., Asuke, Soichiro, Antoniou-Kourounioti, Rea, Steuernagel, Burkhard, Yu, Guotai, Awal, Rajani, Forner-Martínez, Macarena, Wingen, Luzie, Baggs, Erin, Clarke, Jonathan, Saunders, Diane G. O., Krasileva, Ksenia V., Tosa, Yukio, Jones, Jonathan D. G., Tiwari, Vijay K., Wulff, Brande B. H., Nicholson, Paul

“…Since emerging in Brazil in 1985, wheat blast has spread throughout South America and recently appeared in Bangladesh and Zambia. Here we show that two wheat…”
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Separating homeologs by phasing in the tetraploid wheat transcriptome by Krasileva, Ksenia V, Buffalo, Vince, Bailey, Paul, Pearce, Stephen, Ayling, Sarah, Tabbita, Facundo, Soria, Marcelo, Wang, Shichen, Akhunov, Eduard, Uauy, Cristobal, Dubcovsky, Jorge

“…The high level of identity among duplicated homoeologous genomes in tetraploid pasta wheat presents substantial challenges for de novo transcriptome assembly…”
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Global analysis of Arabidopsis/downy mildew interactions reveals prevalence of incomplete resistance and rapid evolution of pathogen recognition by Krasileva, Ksenia V, Zheng, Connie, Leonelli, Lauriebeth, Goritschnig, Sandra, Dahlbeck, Douglas, Staskawicz, Brian J

“…Interactions between Arabidopsis thaliana and its native obligate oomycete pathogen Hyaloperonospora arabidopsidis (Hpa) represent a model system to study…”
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