Search Results - "Krallinger, M."

BioC: a minimalist approach to interoperability for biomedical text processing by Comeau, Donald C, Islamaj Doğan, Rezarta, Ciccarese, Paolo, Cohen, Kevin Bretonnel, Krallinger, Martin, Leitner, Florian, Lu, Zhiyong, Peng, Yifan, Rinaldi, Fabio, Torii, Manabu, Valencia, Alfonso, Verspoor, Karin, Wiegers, Thomas C, Wu, Cathy H, Wilbur, W John

“…A vast amount of scientific information is encoded in natural language text, and the quantity of such text has become so great that it is no longer…”
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Text-mining approaches in molecular biology and biomedicine by Krallinger, Martin, Erhardt, Ramon Alonso-Allende, Valencia, Alfonso

“…Biomedical literature reflects the current state of knowledge in the field, which is of great importance to biomedical research and drug discovery platforms…”
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PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction by Krallinger, Martin, Rodriguez-Penagos, Carlos, Tendulkar, Ashish, Valencia, Alfonso

“…There is an increasing interest in using literature mining techniques to complement information extracted from annotation databases or generated by…”
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Analysis of biological processes and diseases using text mining approaches by Krallinger, Martin, Leitner, Florian, Valencia, Alfonso

“…A number of biomedical text mining systems have been developed to extract biologically relevant information directly from the literature, complementing…”
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An Overview of BioCreative II.5 by Leitner, F, Mardis, S A, Krallinger, M, Cesareni, G, Hirschman, L A, Valencia, A

“…We present the results of the BioCreative II.5 evaluation in association with the FEBS Letters experiment, where authors created Structured Digital Abstracts…”
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Text mining for the biocuration workflow by Hirschman, L., Burns, G. A. P. C., Krallinger, M., Arighi, C., Cohen, K. B., Valencia, A., Hu, C. H., Chatr-Aryamontri, A., Dowell, K. G., Huala, E., Lourenço, Anália, Nash, R., Veuthey, A. L., Wiegers, T., Winter, A. G.

“…Molecular biology has become heavily dependent on biological knowledge encoded in expert curated biological databases. As the volume of biological literature…”
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Text-mining and information-retrieval services for molecular biology by Krallinger, Martin, Valencia, Alfonso

“…Text-mining in molecular biology -- defined as the automatic extraction of information about genes, proteins and their functional relationships from text…”
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Evaluation of BioCreAtIvE assessment of task 2 by Blaschke, Christian, Leon, Eduardo Andres, Krallinger, Martin, Valencia, Alfonso

“…Molecular Biology accumulated substantial amounts of data concerning functions of genes and proteins. Information relating to functional descriptions is…”
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BioCreative-IV virtual issue by Arighi, Cecilia N, Wu, Cathy H, Cohen, Kevin B, Hirschman, Lynette, Krallinger, Martin, Valencia, Alfonso, Lu, Zhiyong, Wilbur, John W, Wiegers, Thomas C

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The Markyt visualisation, prediction and benchmark platform for chemical and gene entity recognition at BioCreative/CHEMDNER challenge by Pérez-Pérez, Martín, Pérez-Rodríguez, Gael, Rabal, Obdulia, Vazquez, Miguel, Oyarzabal, Julen, Fdez-Riverola, Florentino, Valencia, A., Krallinger, M., Lourenço, Anália

“…Biomedical text mining methods and technologies have improved significantly in the last decade. Considerable efforts have been invested in understanding the…”
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An overview of the BioCreative 2012 Workshop Track III: interactive text mining task by Arighi, Cecilia N, Carterette, Ben, Cohen, K Bretonnel, Krallinger, Martin, Wilbur, W John, Fey, Petra, Dodson, Robert, Cooper, Laurel, Van Slyke, Ceri E, Dahdul, Wasila, Mabee, Paula, Li, Donghui, Harris, Bethany, Gillespie, Marc, Jimenez, Silvia, Roberts, Phoebe, Matthews, Lisa, Becker, Kevin, Drabkin, Harold, Bello, Susan, Licata, Luana, Chatr-aryamontri, Andrew, Schaeffer, Mary L, Park, Julie, Haendel, Melissa, Van Auken, Kimberly, Li, Yuling, Chan, Juancarlos, Muller, Hans-Michael, Cui, Hong, Balhoff, James P, Chi-Yang Wu, Johnny, Lu, Zhiyong, Wei, Chih-Hsuan, Tudor, Catalina O, Raja, Kalpana, Subramani, Suresh, Natarajan, Jeyakumar, Cejuela, Juan Miguel, Dubey, Pratibha, Wu, Cathy

“…In many databases, biocuration primarily involves literature curation, which usually involves retrieving relevant articles, extracting information that will…”
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How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience by Krallinger, Martin, Leitner, Florian, Vazquez, Miguel, Salgado, David, Marcelle, Christophe, Tyers, Mike, Valencia, Alfonso, Chatr-aryamontri, Andrew

“…There is an increasing interest in developing ontologies and controlled vocabularies to improve the efficiency and consistency of manual literature curation,…”
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A sentence sliding window approach to extract protein annotations from biomedical articles by Krallinger, Martin, Padron, Maria, Valencia, Alfonso

“…Within the emerging field of text mining and statistical natural language processing (NLP) applied to biomedical articles, a broad variety of techniques have…”
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BioCreative-2012 virtual issue by Wu, Cathy H, Arighi, Cecilia N, Cohen, Kevin B, Hirschman, Lynette, Krallinger, Martin, Lu, Zhiyong, Mattingly, Carolyn, Valencia, Alfonso, Wiegers, Thomas C, John Wilbur, W

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