Search Results - "Kowal, Bryan"

A comprehensive, multi-scale dynamical model of ErbB receptor signal transduction in human mammary epithelial cells by Helikar, Tomáš, Kochi, Naomi, Kowal, Bryan, Dimri, Manjari, Naramura, Mayumi, Raja, Srikumar M, Band, Vimla, Band, Hamid, Rogers, Jim A

“…The non-receptor tyrosine kinase Src and receptor tyrosine kinase epidermal growth factor receptor (EGFR/ErbB1) have been established as collaborators in…”
Get full text

Programmatic access to logical models in the Cell Collective modeling environment via a REST API by Kowal, Bryan M., Schreier, Travis R., Dauer, Joseph T., Helikar, Tomáš

“…Cell Collective (www.cellcollective.org) is a web-based interactive environment for constructing, simulating and analyzing logical models of biological…”
Get full text

Bio-logic builder: a non-technical tool for building dynamical, qualitative models by Helikar, Tomáš, Kowal, Bryan, Madrahimov, Alex, Shrestha, Manish, Pedersen, Jay, Limbu, Kahani, Thapa, Ishwor, Rowley, Thaine, Satalkar, Rahul, Kochi, Naomi, Konvalina, John, Rogers, Jim A

“…Computational modeling of biological processes is a promising tool in biomedical research. While a large part of its potential lies in the ability to integrate…”
Get full text

The Cell Collective: toward an open and collaborative approach to systems biology by Helikar, Tomáš, Kowal, Bryan, McClenathan, Sean, Bruckner, Mitchell, Rowley, Thaine, Madrahimov, Alex, Wicks, Ben, Shrestha, Manish, Limbu, Kahani, Rogers, Jim A

“…Despite decades of new discoveries in biomedical research, the overwhelming complexity of cells has been a significant barrier to a fundamental understanding…”
Get full text

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools by Chaouiya, Claudine, Bérenguier, Duncan, Keating, Sarah M, Naldi, Aurélien, van Iersel, Martijn P, Rodriguez, Nicolas, Dräger, Andreas, Büchel, Finja, Cokelaer, Thomas, Kowal, Bryan, Wicks, Benjamin, Gonçalves, Emanuel, Dorier, Julien, Page, Michel, Monteiro, Pedro T, von Kamp, Axel, Xenarios, Ioannis, de Jong, Hidde, Hucka, Michael, Klamt, Steffen, Thieffry, Denis, Le Novère, Nicolas, Saez-Rodriguez, Julio, Helikar, Tomáš

“…Qualitative frameworks, especially those based on the logical discrete formalism, are increasingly used to model regulatory and signalling networks. A major…”
Get full text

Dynamics of Influenza Virus and Human Host Interactions During Infection and Replication Cycle by Madrahimov, Alex, Helikar, Tomáš, Kowal, Bryan, Lu, Guoqing, Rogers, Jim

“…The replication and life cycle of the influenza virus is governed by an intricate network of intracellular regulatory events during infection, including…”
Get full text

SBML Qualitative Models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools by Chaouiya, Claudine, Berenguier, Duncan, Keating, Sarah M, Naldi, Aurelien, van Iersel, Martijn P, Rodriguez, Nicolas, Dräger, Andreas, Büchel, Finja, Cokelaer, Thomas, Kowal, Bryan, Wicks, Benjamin, Gonçalves, Emanuel, Dorier, Julien, Page, Michel, Monteiro, Pedro T, von Kamp, Axel, Xenarios, Ioannis, de Jong, Hidde, Hucka, Michael, Klamt, Steffen, Thieffry, Denis, Novère, Nicolas Le, Saez-Rodriguez, Julio, Helikar, Tomáš

“…Background: Qualitative frameworks, especially those based on the logical discrete formalism, are increasingly used to model regulatory and signalling…”
Get full text