Search Results - "Kouril Michal"

GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data by Mahi, Naim Al, Najafabadi, Mehdi Fazel, Pilarczyk, Marcin, Kouril, Michal, Medvedovic, Mario

“…The vast amount of RNA-seq data deposited in Gene Expression Omnibus (GEO) and Sequence Read Archive (SRA) is still a grossly underutilized resource for…”
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Survey-software implicit association tests: A methodological and empirical analysis by Carpenter, Thomas P., Pogacar, Ruth, Pullig, Chris, Kouril, Michal, Aguilar, Stephen, LaBouff, Jordan, Isenberg, Naomi, Chakroff, Alek

“…The implicit association test (IAT) is widely used in psychology. Unfortunately, the IAT cannot be run within online surveys, requiring researchers who conduct…”
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Guided construction of single cell reference for human and mouse lung by Guo, Minzhe, Morley, Michael P., Jiang, Cheng, Wu, Yixin, Li, Guangyuan, Du, Yina, Zhao, Shuyang, Wagner, Andrew, Cakar, Adnan Cihan, Kouril, Michal, Jin, Kang, Gaddis, Nathan, Kitzmiller, Joseph A., Stewart, Kathleen, Basil, Maria C., Lin, Susan M., Ying, Yun, Babu, Apoorva, Wikenheiser-Brokamp, Kathryn A., Mun, Kyu Shik, Naren, Anjaparavanda P., Clair, Geremy, Adkins, Joshua N., Pryhuber, Gloria S., Misra, Ravi S., Aronow, Bruce J., Tickle, Timothy L., Salomonis, Nathan, Sun, Xin, Morrisey, Edward E., Whitsett, Jeffrey A., Xu, Yan

“…Accurate cell type identification is a key and rate-limiting step in single-cell data analysis. Single-cell references with comprehensive cell types,…”
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GRcalculator: an online tool for calculating and mining dose-response data by Clark, Nicholas A, Hafner, Marc, Kouril, Michal, Williams, Elizabeth H, Muhlich, Jeremy L, Pilarczyk, Marcin, Niepel, Mario, Sorger, Peter K, Medvedovic, Mario

“…Quantifying the response of cell lines to drugs or other perturbagens is the cornerstone of pre-clinical drug development and pharmacogenomics as well as a…”
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Connecting omics signatures and revealing biological mechanisms with iLINCS by Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Kouril, Michal, Shamsaei, Behrouz, Vasiliauskas, Juozas, Niu, Wen, Mahi, Naim, Zhang, Lixia, Clark, Nicholas A., Ren, Yan, White, Shana, Karim, Rashid, Xu, Huan, Biesiada, Jacek, Bennett, Mark F., Davidson, Sarah E., Reichard, John F., Roberts, Kurt, Stathias, Vasileios, Koleti, Amar, Vidovic, Dusica, Clarke, Daniel J. B., Schürer, Stephan C., Ma’ayan, Avi, Meller, Jarek, Medvedovic, Mario

“…There are only a few platforms that integrate multiple omics data types, bioinformatics tools, and interfaces for integrative analyses and visualization that…”
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Sounds good: Phonetic sound patterns in top brand names by Pogacar, Ruth, Plant, Emily, Rosulek, Laura Felton, Kouril, Michal

“…Recent research has demonstrated that brand name sounds can influence consumer behavior. Sound symbolism, the link between sound and meaning, can convey…”
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Survey of public domain software for docking simulations and virtual screening by Biesiada, Jacek, Porollo, Aleksey, Velayutham, Prakash, Kouril, Michal, Meller, Jaroslaw

“…Progress in functional genomics and structural studies on biological macromolecules are generating a growing number of potential targets for therapeutics,…”
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An application programming interface implementing Bayesian approaches for evaluating effect of time-varying treatment with R and Python by Chen, Chen, Huang, Bin, Kouril, Michal, Liu, Jinzhong, Kim, Hang, Sivaganisan, Siva, Welge, Jeffrey A., DelBello, Melissa P.

“…IntroductionMethods and tools evaluating treatment effect have been primarily developed for binary type of treatment. Yet, treatment is rarely binary outside…”
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Digital health technology to support patient-centered shared decision making at point of care for juvenile idiopathic arthritis by Huang, Bin, Kouril, Michal, Chen, Chen, Daraiseh, Nancy M., Ferraro, Kerry, Mannion, Melissa L., Brunner, Hermine I., Lovell, Daniel J., Morgan, Esi M.

“…Despite availability of multiple FDA approved therapies, many children with juvenile idiopathic arthritis (JIA) suffer pain and disability due to uncontrolled…”
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An observational study of Internet behaviours for adolescent females following sexual abuse by Noll, Jennie G., Haag, Ann-Christin, Shenk, Chad E., Wright, Michelle F., Barnes, Jaclyn E., Kohram, Mojtaba, Malgaroli, Matteo, Foley, David J., Kouril, Michal, Bonanno, George A.

“…Child sexual abuse (CSA) is associated with revictimization and sexual risk-taking behaviours. The Internet has increased the opportunities for teens to access…”
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Correction: The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system by Mandl, Kenneth D., Glauser, Tracy, Krantz, Ian D., Avillach, Paul, Bartels, Anna, Beggs, Alan H., Biswas, Sawona, Bourgeois, Florence T., Corsmo, Jeremy, Dauber, Andrew, Devkota, Batsal, Fleisher, Gary R., Heath, Allison P., Helbig, Ingo, Hirschhorn, Joel N., Kilbourn, Judson, Kong, Sek Won, Kornetsky, Susan, Majzoub, Joseph A., Marsolo, Keith, Martin, Lisa J., Nix, Jeremy, Schwarzhoff, Amy, Stedman, Jason, Strauss, Arnold, Sund, Kristen L., Taylor, Deanne M., White, Peter S., Marsh, Eric, Grimberg, Adda, Hawkes, Colin

“…An amendment to this paper has been published and can be accessed via a link at the top of the paper…”
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An interactive online dashboard for tracking COVID-19 in U.S. counties, cities, and states in real time by Wissel, Benjamin D, Van Camp, P J, Kouril, Michal, Weis, Chad, Glauser, Tracy A, White, Peter S, Kohane, Isaac S, Dexheimer, Judith W

“…Abstract Objective The study sought to create an online resource that informs the public of coronavirus disease 2019 (COVID-19) outbreaks in their area…”
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Implicit and explicit preferences for brand name sounds by Pogacar, Ruth, Kouril, Michal, Carpenter, Thomas P., Kellaris, James J.

“…This research shows that people implicitly and explicitly prefer sounds that are more common among top brand names (e.g., “S,” “M,” “L,” and “E”). Implicit…”
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Perception vs Reality with Medication Alert Rates by Dexheimer, Judith W., Kirkendall, Eric, Kouril, Michal, Courter, Joshua, Hagedorn, Philip, Minich, Thomas, Spooner, Stephen A.

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An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors by Zhang, Xuan, Song, Baobao, Carlino, Maximillian J., Li, Guangyuan, Ferchen, Kyle, Chen, Mi, Thompson, Evrett N., Kain, Bailee N., Schnell, Dan, Thakkar, Kairavee, Kouril, Michal, Jin, Kang, Hay, Stuart B., Sen, Sidharth, Bernardicius, David, Ma, Siyuan, Bennett, Sierra N., Croteau, Josh, Salvatori, Ornella, Lye, Melvin H., Gillen, Austin E., Jordan, Craig T., Singh, Harinder, Krause, Diane S., Salomonis, Nathan, Grimes, H. Leighton

“…Analysis of the human hematopoietic progenitor compartment is being transformed by single-cell multimodal approaches. Cellular indexing of transcriptomes and…”
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Connectivity Enhanced Structure Activity Relationship (ceSAR): A Novel Approach to Increase Accuracy and Speed of Virtual Drug Discovery by Thorman, Alexander William, Reigle, James, Chutipongtanate, Somchai, Shamsaei, Behrouz, Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Adamczak, Rafal, Kouril, Michal, Medvedovic, Mario, Meller, Jarek

“…Abstract only…”
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LungMAP Portal Ecosystem: Systems-level Exploration of the Lung by Gaddis, Nathan, Fortriede, Joshua, Guo, Minzhe, Bardes, Eric E, Kouril, Michal, Tabar, Scott, Burns, Kevin, Ardini-Poleske, Maryanne E, Loos, Stephanie, Schnell, Daniel, Jin, Kang, Iyer, Balaji, Du, Yina, Huo, Bing-Xing, Bhattacharjee, Anukana, Korte, Jeff, Munshi, Ruchi, Smith, Victoria, Herbst, Andrew, Kitzmiller, Joseph A, Clair, Geremy C, Carson, James P, Adkins, Joshua, Morrisey, Edward E, Pryhuber, Gloria S, Misra, Ravi, Whitsett, Jeffrey A, Sun, Xin, Heathorn, Trevor, Paten, Benedict, Prasath, V B Surya, Xu, Yan, Tickle, Tim, Aronow, Bruce J, Salomonis, Nathan

“…An improved understanding of the human lung necessitates advanced systems models informed by an ever-increasing repertoire of molecular omics, cellular…”
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Democracy and Social Conflict in Burma by Kouřil, Michal

“…This article aims to evaluate the implications of the general elections inBurma in 2015 for the ongoing armed conflicts in this country. The article…”
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The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system by Mandl, Kenneth D., Glauser, Tracy, Krantz, Ian D., Avillach, Paul, Bartels, Anna, Beggs, Alan H., Biswas, Sawona, Bourgeois, Florence T., Corsmo, Jeremy, Dauber, Andrew, Devkota, Batsal, Fleisher, Gary R., Heath, Allison P., Helbig, Ingo, Hirschhorn, Joel N., Kilbourn, Judson, Kong, Sek Won, Kornetsky, Susan, Majzoub, Joseph A., Marsolo, Keith, Martin, Lisa J., Nix, Jeremy, Schwarzhoff, Amy, Stedman, Jason, Strauss, Arnold, Sund, Kristen L., Taylor, Deanne M., White, Peter S., Marsh, Eric, Grimberg, Adda, Hawkes, Colin

“…Purpose Clinicians and researchers must contextualize a patient’s genetic variants against population-based references with detailed phenotyping. We sought to…”
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Building gold standard corpora for medical natural language processing tasks by Deleger, Louise, Li, Qi, Lingren, Todd, Kaiser, Megan, Molnar, Katalin, Stoutenborough, Laura, Kouril, Michal, Marsolo, Keith, Solti, Imre

“…We present the construction of three annotated corpora to serve as gold standards for medical natural language processing (NLP) tasks. Clinical notes from the…”
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