Search Results - "Kotil, Seyfullah"

Rationally designing antisense therapy to keep up with evolving bacterial resistance by Kotil, Seyfullah, Jakobsson, Eric

“…Antisense molecules used as antibiotics offer the potential to keep up with acquired resistance, by redesigning the sequence of an antisense. Once bacteria…”
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Emergence of evolutionarily stable communities through eco-evolutionary tunnelling by Kotil, Seyfullah Enes, Vetsigian, Kalin

“…Ecological and evolutionary dynamics of communities are inexorably intertwined. The ecological state determines the fate of newly arising mutants, and…”
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Using a real-world network to model the trade-off between stay-at-home restriction, vaccination, social distancing and working hours on COVID-19 dynamics by Nashebi, Ramin, Sari, Murat, Kotil, Seyfullah

“…Human behaviour, economic activity, vaccination, and social distancing are inseparably entangled in epidemic management. This study aims to investigate the…”
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Machine learning aided multiscale modelling of the HIV-1 infection in the presence of NRTI therapy by Tunc, Huseyin, Sari, Murat, Kotil, Seyfullah

“…Human Immunodeficiency Virus (HIV) is one of the most common chronic infectious diseases in humans. Extending the expected lifetime of patients depends on the…”
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Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks by Tunc, Huseyin, Dogan, Berna, Darendeli Kiraz, Büşra Nur, Sari, Murat, Durdagi, Serdar, Kotil, Seyfullah

“…Drug resistance is a primary barrier to effective treatments of HIV/AIDS. Calculating quantitative relations between genotype and phenotype observations for…”
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Mathematical modelling of antibiotic interaction on evolution of antibiotic resistance: an analytical approach by Nashebi, Ramin, Sari, Murat, Kotil, Seyfullah Enes

“…The emergence and spread of antibiotic-resistant pathogens have led to the exploration of antibiotic combinations to enhance clinical effectiveness and counter…”
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Characterization of genomic, physiological, and probiotic features Lactiplantibacillus plantarum DY46 strain isolated from traditional lactic acid fermented shalgam beverage by Yetiman, Ahmet E., Keskin, Abdullah, Darendeli, Büşra Nur, Kotil, Seyfullah Enes, Ortakci, Fatih, Dogan, Mahmut

“…Lactiplantibacillus plantarum is a significant probiotic where it could be found in ubiquitous niches. In this study, a new Lb. plantarum strain DY46 was…”
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Investigating the eco-evolutionary tunnels for establishing cooperative communities by Kotil, Seyfullah Enes, Vetsigian, Kalin

“…Diversity is abundant among microbial communities. Understanding the assembly of diverse microbial communities is a significant challenge. One of the recent…”
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Effect of sojourn time distributions on the early dynamics of COVID-19 outbreak by Tunc, Huseyin, Sari, Murat, Kotil, Seyfullah Enes

“…Compartmental models are commonly used in practice to investigate the dynamical response of infectious diseases such as the COVID-19 outbreak. Such models…”
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Exploring the binding capacity of lactic acid bacteria derived bacteriocins against RBD of SARS-CoV-2 Omicron variant by molecular simulations by Erol, Ismail, Kotil, Seyfullah Enes, Ortakci, Fatih, Durdagi, Serdar

“…The changes in the SARS-CoV-2 genome have resulted in the emergence of new variants. Some of the variants have been classified as variants of concern (VOC)…”
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Improving Predictive Efficacy for Drug Resistance in Novel HIV‑1 Protease Inhibitors through Transfer Learning Mechanisms by Tunc, Huseyin, Yilmaz, Sumeyye, Darendeli Kiraz, Busra Nur, Sari, Murat, Kotil, Seyfullah Enes, Sensoy, Ozge, Durdagi, Serdar

“…The human immunodeficiency virus presents a significant global health challenge due to its rapid mutation and the development of resistance mechanisms against…”
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In Silico Analysis of Bacteriocins from Lactic Acid Bacteria Against SARS-CoV-2 by Erol, Ismail, Kotil, Seyfullah Enes, Fidan, Ozkan, Yetiman, Ahmet E., Durdagi, Serdar, Ortakci, Fatih

“…The COVID-19 pandemic caused by a novel coronavirus (SARS-CoV-2) is a serious health concern in the twenty-first century for scientists, health workers, and…”
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