Search Results - "Kogawa, Masato"

Massively parallel whole genome amplification for single-cell sequencing using droplet microfluidics by Hosokawa, Masahito, Nishikawa, Yohei, Kogawa, Masato, Takeyama, Haruko

“…Massively parallel single-cell genome sequencing is required to further understand genetic diversities in complex biological systems. Whole genome…”
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Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes by Kogawa, Masato, Hosokawa, Masahito, Nishikawa, Yohei, Mori, Kazuki, Takeyama, Haruko

“…Single-cell genomics is a straightforward approach to obtain genomes from uncultured microbes. However, sequence reads from a single-cell amplified genome…”
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Strain-level profiling of viable microbial community by selective single-cell genome sequencing by Hosokawa, Masahito, Endoh, Taruho, Kamata, Kazuma, Arikawa, Koji, Nishikawa, Yohei, Kogawa, Masato, Saeki, Tatsuya, Yoda, Takuya, Takeyama, Haruko

“…Culture-independent analysis with high-throughput sequencing has been widely used to characterize bacterial communities. However, signals derived from…”
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Single-cell genomics of uncultured bacteria reveals dietary fiber responders in the mouse gut microbiota by Chijiiwa, Rieka, Hosokawa, Masahito, Kogawa, Masato, Nishikawa, Yohei, Ide, Keigo, Sakanashi, Chikako, Takahashi, Kai, Takeyama, Haruko

“…The gut microbiota can have dramatic effects on host metabolism; however, current genomic strategies for uncultured bacteria have several limitations that…”
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Analysis of microbial dynamics in the soybean root-associated environments from community to single-cell levels by Kifushi, Masako, Nishikawa, Yohei, Hosokawa, Masahito, Ide, Keigo, Kogawa, Masato, Anai, Toyoaki, Takeyama, Haruko

“…Plant root-associated environments such as the rhizosphere, rhizoplane, and endosphere, are notably different from non-root-associated soil environments…”
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Revealing within-species diversity in uncultured human gut bacteria with single-cell long-read sequencing by Kogawa, Masato, Nishikawa, Yohei, Saeki, Tatsuya, Yoda, Takuya, Arikawa, Koji, Takeyama, Haruko, Hosokawa, Masahito

“…Obtaining complete and accurate bacterial genomes is vital for studying the characteristics of uncultured bacteria. Single-cell genomics is a promising…”
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Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics by Arikawa, Koji, Ide, Keigo, Kogawa, Masato, Saeki, Tatsuya, Yoda, Takuya, Endoh, Taruho, Matsuhashi, Ayumi, Takeyama, Haruko, Hosokawa, Masahito

“…Background Obtaining high-quality (HQ) reference genomes from microbial communities is crucial for understanding the phylogeny and function of uncultured…”
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Dietary Vitamin B1 Intake Influences Gut Microbial Community and the Consequent Production of Short-Chain Fatty Acids by Park, Jonguk, Hosomi, Koji, Kawashima, Hitoshi, Chen, Yi-An, Mohsen, Attayeb, Ohno, Harumi, Konishi, Kana, Tanisawa, Kumpei, Kifushi, Masako, Kogawa, Masato, Takeyama, Haruko, Murakami, Haruka, Kubota, Tetsuya, Miyachi, Motohiko, Kunisawa, Jun, Mizuguchi, Kenji

“…The gut microbiota is closely related to good health; thus, there have been extensive efforts dedicated to improving health by controlling the gut microbial…”
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High-throughput identification of peptide agonists against GPCRs by co-culture of mammalian reporter cells and peptide-secreting yeast cells using droplet microfluidics by Yaginuma, Kenshi, Aoki, Wataru, Miura, Natsuko, Ohtani, Yuta, Aburaya, Shunsuke, Kogawa, Masato, Nishikawa, Yohei, Hosokawa, Masahito, Takeyama, Haruko, Ueda, Mitsuyoshi

“…Since G-protein coupled receptors (GPCRs) are linked to various diseases, screening of functional ligands against GPCRs is vital for drug discovery. In the…”
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Massively parallel single-cell genomics of microbiomes in rice paddies by Aoki, Wataru, Kogawa, Masato, Matsuda, Shuhei, Matsubara, Keisuke, Hirata, Shintaro, Nishikawa, Yohei, Hosokawa, Masahito, Takeyama, Haruko, Matoh, Toru, Ueda, Mitsuyoshi

“…Plant growth-promoting microbes (PGPMs) have attracted increasing attention because they may be useful in increasing crop yield in a low-input and sustainable…”
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Targeted single-cell genomics reveals novel host adaptation strategies of the symbiotic bacteria Endozoicomonas in Acropora tenuis coral by Ide, Keigo, Nishikawa, Yohei, Maruyama, Toru, Tsukada, Yuko, Kogawa, Masato, Takeda, Hiroki, Ito, Haruka, Wagatsuma, Ryota, Miyaoka, Rimi, Nakano, Yoshikatsu, Kinjo, Koji, Ito, Michihiro, Hosokawa, Masahito, Yura, Kei, Suda, Shoichiro, Takeyama, Haruko

“…Endozoicomonas bacteria symbiosis with various marine organisms is hypothesized as a potential indicator of health in corals. Although many amplicon analyses…”
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Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater by Nishikawa, Yohei, Kogawa, Masato, Hosokawa, Masahito, Wagatsuma, Ryota, Mineta, Katsuhiko, Takahashi, Kai, Ide, Keigo, Yura, Kei, Behzad, Hayedeh, Gojobori, Takashi, Takeyama, Haruko

“…Single-cell genomics is applied to environmental samples as a method to solve the problems of current metagenomics. However, in the fluorescence-activated cell…”
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Combined actions of bacteriophage-encoded genes in Wolbachia-induced male lethality by Arai, Hiroshi, Anbutsu, Hisashi, Nishikawa, Yohei, Kogawa, Masato, Ishii, Kazuo, Hosokawa, Masahito, Lin, Shiou-Ruei, Ueda, Masatoshi, Nakai, Madoka, Kunimi, Yasuhisa, Harumoto, Toshiyuki, Kageyama, Daisuke, Takeyama, Haruko, Inoue, Maki N.

“…Some Wolbachia endosymbionts induce male killing, whereby male offspring of infected females are killed during development; however, the origin and diversity…”
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Single-cell metabolite detection and genomics reveals uncultivated talented producer by Kogawa, Masato, Miyaoka, Rimi, Hemmerling, Franziska, Ando, Masahiro, Yura, Kei, Ide, Keigo, Nishikawa, Yohei, Hosokawa, Masahito, Ise, Yuji, Cahn, Jackson K B, Takada, Kentaro, Matsunaga, Shigeki, Mori, Tetsushi, Piel, Jörn, Takeyama, Haruko

“…The production of bioactive metabolites is increasingly recognized as an important function of host-associated bacteria. An example is defensive symbiosis that…”
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Comparative single-cell genomics of Atribacterota JS1 in the Japan Trench hadal sedimentary biosphere by Jitsuno, Kana, Hoshino, Tatsuhiko, Nishikawa, Yohei, Kogawa, Masato, Mineta, Katsuhiko, Strasser, Michael, Ikehara, Ken, Everest, Jeremy, Maeda, Lena, Inagaki, Fumio, Takeyama, Haruko

“…Deep-sea and subseafloor sedimentary environments host heterotrophic microbial communities that contribute to Earth's carbon cycling. However, the potential…”
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Metagenomic profiling of antibiotic resistance genes and their associations with the bacterial community along the Kanda River, an urban river in Japan by Xiao, Chang, Ide, Keigo, Matsunaga, Hiroko, Kogawa, Masato, Wagatsuma, Ryota, Takeyama, Haruko

“…Antibiotic resistance genes (ARGs) present in urban rivers have the potential to disseminate antibiotic-resistant bacteria into other environments, posing…”
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Cancer Cachexia among Patients with Advanced Non-Small-Cell Lung Cancer on Immunotherapy: An Observational Study with Exploratory Gut Microbiota Analysis by Hakozaki, Taiki, Nolin-Lapalme, Alexis, Kogawa, Masato, Okuma, Yusuke, Nakamura, Shohei, Moreau-Amaru, Danielle, Tamura, Taichi, Hosomi, Yukio, Takeyama, Haruko, Richard, Corentin, Hosokawa, Masahito, Routy, Bertrand

“…Cancer cachexia exerts a negative clinical influence on patients with advanced non-small-cell lung cancer (NSCLC) treated with immune checkpoint inhibitors…”
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Identification of lipolytic enzymes using high-throughput single-cell screening and sorting of a metagenomic library by Alma’abadi, Amani, Behzad, Hayedeh, Alarawi, Mohammed, Conchouso, David, Saito, Yoshimoto, Hosokawa, Masahito, Nishikawa, Yohei, Kogawa, Masato, Takeyama, Haruko, Mineta, Katsuhiko, Gojobori, Takashi

“…The demand for novel, robust microbial biocatalysts for use in industrial and pharmaceutical applications continues to increase rapidly. As a result, there is…”
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High-Quality Draft Genome Sequence of a Rickettsiales Bacterium Found in Acropora tenuis Coral from Okinawa, Japan by Ide, Keigo, Nishikawa, Yohei, Kogawa, Masato, Iwamoto, Eisuke, Samuel, Ashok Zachariah, Nakano, Yoshikatsu, Takeyama, Haruko

“…Rickettsiales -like organisms are important for the survival and functioning of corals, prompting an investigation of their complete genomes. Earlier reports…”
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Draft Genome Sequence of Okeania sp. Strain KiyG1, Assembled from Single-Amplified Genomes Collected from Cape Kiyan, Okinawa, Japan by Lewaru, Muhammad Wahyudin, Nishikawa, Yohei, Ide, Keigo, Kogawa, Masato, Hosokawa, Masahito, Samuel, Ashok Zachariah, Sumimoto, Shinpei, Nuryadi, Handung, Suda, Shoichiro, Takeyama, Haruko

“…The genus Okeania is a globally distributed group of microorganisms that live in shallow seabed regions. These organisms play several environmentally important…”
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